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The map label for this gene is secD [H]

Identifier: 50083824

GI number: 50083824

Start: 576898

End: 578799

Strand: Reverse

Name: secD [H]

Synonym: ACIAD0588

Alternate gene names: 50083824

Gene position: 578799-576898 (Counterclockwise)

Preceding gene: 50083825

Following gene: 50083823

Centisome position: 16.08

GC content: 48.37

Gene sequence:

>1902_bases
ATGCGTTACCCTGCATGGAAATATGTGCTGATCATTGTTGTCTTGATTATCAGCACTTTATACGCACTGCCAAGTTTGTA
TCCAGACGAGCCTGCTGTTCAGATTTCTGGTGCCAAAGCCGGTACTCAAATCGACCAGAGCATGGTGCAAAAAGCAGAGC
AAATTTTAAAAACTGCCAACATCACCAGTCATGACAACAGCTTTGCCAATAATGCTGCCCTGTTACGTCTTAACTCATCG
GAAGATCAGCTCAAGGCACAGGATGTATTGCGTCGTGATTTAGGCGACAACTATGTGGTGGCGTTAAACCTTGCCCCAAC
CACGCCAGAATGGCTTCAGAAAATTGGTGCCAAACCAATGAAACTGGGCCTCGACTTACGTGGTGGCGTACACTTCTTGC
TCGAAGTGGACATGAACAAGGCGATTGCGCAGCGCATGGAAACGTCGGTCAGTGATATTCGCCGCCAATTCCGCGACAAC
AATATCAAGTTCAATAGCTTATCGCTTAACAACAATGCGATTGTGCTGCAATTTGCAAATAACGCAGATCGCGACACGGC
GATGGACTTTTTACGTCGTAATGGCAACGAATACACACAACAGGCGGTCGCAACGGCAACTGGTGCATCACTGCGTCTGA
GCTATACCGATGCTCGTCGTCAGGAAATCGAGTCGTATGCGGTTAACCAAAACTTAACCACATTGCGTAATCGTATTAAC
GAGTTGGGCGTGGCTGAAGCTTTGGTTCAAACCCAAGGCAGCAACCGTATTGTGGTGGAATTGCCGGGCGTTCAGGATAC
TGCTGAAGCCAAGCGTGTTCTGGGTCGTACGGCCAATCTTGAGTTCCGTTTGGTTGCCGATCAAAATGATCAATATATCG
ACCCATATACCGGTAAATATAATGGTCAGCCATTGCCACCGGGCACAGAGTTGTTTGCCTATGAGTCACTCGACAGTGGT
CGTCAGTTGTTGCTCAATCGCAACCGCATCTTGACCGGTGAACGCGTGCAAAACGCAAGTTCTGGCTTTAGTCAGGATAC
AGGCGGTGCCGAAGTGAATATCACGCTCGACAGCGCTGGCGGTAAGCTCATGGCAGATGCGACACGAAATGCAGTGGGTA
AACGTATGGCGGTGTTGTTTATCGAAAATAAACAACGCGTCAGTTATGTGACGGATCCGGCAACTGGTGCACAAACTGAA
GTGCGTACACCATTTACGGAATCGGTCATTATCAACGCCGCGACTGTCCAAGCTGTTTTGGGCTCACAGTTCCGAATTAC
CGGTCTGGATTCTCCTCAAGAAGCGGCTGAACTGGCGTTGATGCTTCGTGCGGGTGCACTTGCAGCACCGATGTACTTTG
TTGAAGAACGCGTGGTTGGTCCAAGTCTTGGTCAGGAAAATATCGACAAAGGGATTCTGTCTACTGAAGTCGGCTTTATT
CTGGTCGCGATCTGGATGATCGTGTTCTTCCGCTTGTTCGGTTTGATTGCAAACTTTGCTCTCGTGTTTAACTTGGCAAT
GATTCTTACTGTAATGTCGTGGATTGGTGCATCGCTCACCCTACCGGGGATTGCCGGTATCGTCATTACCATCGGGATGG
CGGTCGATGCGAACGTACTGATTTGTGAACGAATACGTGAAGAAATCAAATGGGGGGCTTCGCCCAAGCAGGCCATTGTG
GCCGGCTATGATCGTGCCTACAACACCATTTTTGACTCGAACTTAACCACATTCTTGGTGGCGTTCATTTTGTTTGCAAT
TGGTACAGGTCCAATCAAAGGTTTCGCAGTGACGCTGATGATTGGTATTGTCTGCTCGATGTTTACTGCCATTACCGTGA
CCCGTGCAATTGTACAGCTCATTTATGGCAAACGTCGTAACTTGAAAAAGTTGAGCATATAA

Upstream 100 bases:

>100_bases
TAGTGTGATTTCAGTGTTACCTGAAGGCACACTCAATAACCTTTAATCAAAAAGACAGTCGTGCACCCCGCACGACTTTT
TCATTTTAAGAAGAAAGCGA

Downstream 100 bases:

>100_bases
GGAGATCGATGATGACTGATATGACTCAACCTAAACCCAAGCAGTATGGCCGTCCAGACAACGAGCGGGTGATTCCGTTT
ATGAAAATTGCCAAACCAGC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 633; Mature: 633

Protein sequence:

>633_residues
MRYPAWKYVLIIVVLIISTLYALPSLYPDEPAVQISGAKAGTQIDQSMVQKAEQILKTANITSHDNSFANNAALLRLNSS
EDQLKAQDVLRRDLGDNYVVALNLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMNKAIAQRMETSVSDIRRQFRDN
NIKFNSLSLNNNAIVLQFANNADRDTAMDFLRRNGNEYTQQAVATATGASLRLSYTDARRQEIESYAVNQNLTTLRNRIN
ELGVAEALVQTQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVADQNDQYIDPYTGKYNGQPLPPGTELFAYESLDSG
RQLLLNRNRILTGERVQNASSGFSQDTGGAEVNITLDSAGGKLMADATRNAVGKRMAVLFIENKQRVSYVTDPATGAQTE
VRTPFTESVIINAATVQAVLGSQFRITGLDSPQEAAELALMLRAGALAAPMYFVEERVVGPSLGQENIDKGILSTEVGFI
LVAIWMIVFFRLFGLIANFALVFNLAMILTVMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEIKWGASPKQAIV
AGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAIVQLIYGKRRNLKKLSI

Sequences:

>Translated_633_residues
MRYPAWKYVLIIVVLIISTLYALPSLYPDEPAVQISGAKAGTQIDQSMVQKAEQILKTANITSHDNSFANNAALLRLNSS
EDQLKAQDVLRRDLGDNYVVALNLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMNKAIAQRMETSVSDIRRQFRDN
NIKFNSLSLNNNAIVLQFANNADRDTAMDFLRRNGNEYTQQAVATATGASLRLSYTDARRQEIESYAVNQNLTTLRNRIN
ELGVAEALVQTQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVADQNDQYIDPYTGKYNGQPLPPGTELFAYESLDSG
RQLLLNRNRILTGERVQNASSGFSQDTGGAEVNITLDSAGGKLMADATRNAVGKRMAVLFIENKQRVSYVTDPATGAQTE
VRTPFTESVIINAATVQAVLGSQFRITGLDSPQEAAELALMLRAGALAAPMYFVEERVVGPSLGQENIDKGILSTEVGFI
LVAIWMIVFFRLFGLIANFALVFNLAMILTVMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEIKWGASPKQAIV
AGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAIVQLIYGKRRNLKKLSI
>Mature_633_residues
MRYPAWKYVLIIVVLIISTLYALPSLYPDEPAVQISGAKAGTQIDQSMVQKAEQILKTANITSHDNSFANNAALLRLNSS
EDQLKAQDVLRRDLGDNYVVALNLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMNKAIAQRMETSVSDIRRQFRDN
NIKFNSLSLNNNAIVLQFANNADRDTAMDFLRRNGNEYTQQAVATATGASLRLSYTDARRQEIESYAVNQNLTTLRNRIN
ELGVAEALVQTQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVADQNDQYIDPYTGKYNGQPLPPGTELFAYESLDSG
RQLLLNRNRILTGERVQNASSGFSQDTGGAEVNITLDSAGGKLMADATRNAVGKRMAVLFIENKQRVSYVTDPATGAQTE
VRTPFTESVIINAATVQAVLGSQFRITGLDSPQEAAELALMLRAGALAAPMYFVEERVVGPSLGQENIDKGILSTEVGFI
LVAIWMIVFFRLFGLIANFALVFNLAMILTVMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEIKWGASPKQAIV
AGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAIVQLIYGKRRNLKKLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=635, Percent_Identity=46.4566929133858, Blast_Score=542, Evalue=1e-155,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 69332; Mature: 69332

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYPAWKYVLIIVVLIISTLYALPSLYPDEPAVQISGAKAGTQIDQSMVQKAEQILKTAN
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCC
ITSHDNSFANNAALLRLNSSEDQLKAQDVLRRDLGDNYVVALNLAPTTPEWLQKIGAKPM
CCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCCE
KLGLDLRGGVHFLLEVDMNKAIAQRMETSVSDIRRQFRDNNIKFNSLSLNNNAIVLQFAN
EECCEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEECC
NADRDTAMDFLRRNGNEYTQQAVATATGASLRLSYTDARRQEIESYAVNQNLTTLRNRIN
CCCHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCCCHHHHHHHHH
ELGVAEALVQTQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVADQNDQYIDPYTGKY
HHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCC
NGQPLPPGTELFAYESLDSGRQLLLNRNRILTGERVQNASSGFSQDTGGAEVNITLDSAG
CCCCCCCCCCEEEECCCCCCHHHHHCCCCEECCHHHHCCCCCCCCCCCCCEEEEEEECCC
GKLMADATRNAVGKRMAVLFIENKQRVSYVTDPATGAQTEVRTPFTESVIINAATVQAVL
CEEEHHHHHHHHCCEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCHHHEEEHHHHHHHH
GSQFRITGLDSPQEAAELALMLRAGALAAPMYFVEERVVGPSLGQENIDKGILSTEVGFI
CCCEEEECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHH
LVAIWMIVFFRLFGLIANFALVFNLAMILTVMSWIGASLTLPGIAGIVITIGMAVDANVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHEEEHHCCCCHH
ICERIREEIKWGASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLM
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
IGIVCSMFTAITVTRAIVQLIYGKRRNLKKLSI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRYPAWKYVLIIVVLIISTLYALPSLYPDEPAVQISGAKAGTQIDQSMVQKAEQILKTAN
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCC
ITSHDNSFANNAALLRLNSSEDQLKAQDVLRRDLGDNYVVALNLAPTTPEWLQKIGAKPM
CCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCCE
KLGLDLRGGVHFLLEVDMNKAIAQRMETSVSDIRRQFRDNNIKFNSLSLNNNAIVLQFAN
EECCEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEECC
NADRDTAMDFLRRNGNEYTQQAVATATGASLRLSYTDARRQEIESYAVNQNLTTLRNRIN
CCCHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCCCHHHHHHHHH
ELGVAEALVQTQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVADQNDQYIDPYTGKY
HHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCC
NGQPLPPGTELFAYESLDSGRQLLLNRNRILTGERVQNASSGFSQDTGGAEVNITLDSAG
CCCCCCCCCCEEEECCCCCCHHHHHCCCCEECCHHHHCCCCCCCCCCCCCEEEEEEECCC
GKLMADATRNAVGKRMAVLFIENKQRVSYVTDPATGAQTEVRTPFTESVIINAATVQAVL
CEEEHHHHHHHHCCEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCHHHEEEHHHHHHHH
GSQFRITGLDSPQEAAELALMLRAGALAAPMYFVEERVVGPSLGQENIDKGILSTEVGFI
CCCEEEECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHH
LVAIWMIVFFRLFGLIANFALVFNLAMILTVMSWIGASLTLPGIAGIVITIGMAVDANVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHEEEHHCCCCHH
ICERIREEIKWGASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLM
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
IGIVCSMFTAITVTRAIVQLIYGKRRNLKKLSI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]