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The map label for this gene is yhjC [H]

Identifier: 50083687

GI number: 50083687

Start: 431869

End: 432768

Strand: Direct

Name: yhjC [H]

Synonym: ACIAD0434

Alternate gene names: 50083687

Gene position: 431869-432768 (Clockwise)

Preceding gene: 50083685

Following gene: 50083691

Centisome position: 12.0

GC content: 40.0

Gene sequence:

>900_bases
ATGATGGATCGGTTACAACAGTTTGAGATATTTATAGAGGTTGCCAAACGAGAAAGTTTTAGTGAGGCTGCATTACGTCT
AGATCTACCACGCTCTACCGTTACGGCCGCGATTCAAAATCTGGAAGCAAGTTATAAAGTTCGTCTTTTTCAGCGAACGA
CGCGTCGAGTAAGTCTGACGCAGGATGGTAAACGAATTTTGCCAGAGTGTCAGAATTTGCTAGCCGACTACCAGCTTTTA
GAGCAAATGATCCAGACACATCATCAGGATTATCAGGGCATTATCAAAGTGGATATGCCAAGCCGAATTTCACATCAGAT
TGTTGTACCTGCAATTGGTGATTTTTTTCAGCAATATCCTCATATTCGGATTCAACTCCATAGTTCAGATCATTTAACTA
ATTTAGTTGAACAGGAGGTAGACTGTGTTGTGAGAGTCGGAATCTTGGAAAATAGTAGTCTGATTGCAAAAACAGTGGGT
CATTTAAGCATGGTAAATTGTGCCAGTCCTACATATTTACAGACATTTGGTGTACCCCAACAGCTTAAAGATTTGCATCA
ACATCAGTTAGTCAATTATCAGAATGGTGTGGGCGATCAACAAGGTACCTTTTTTTATGGTGATCAATACATCAAGTTAA
ATACTAGATTGAGCGTAAACAATACCGAAGCTTATATACAAGCAGCTCGTGCTGGTTTGGGAATTATTCAAGTACCGTAC
TATGATGTCTATCAGGATCTTTTGAGTGGAAGGCTGGTTGAAATATTAAAAGACGATGTCTGTCCATCCTTGCCTTTAAA
TGTACTGTATCCGAATCGACACTATATTCCGCGCCGTCTGGATGTATTTATGAGTTGGCTGATTCCATTATTGCAACGGC
AGTGCTGTATACGATCTTAA

Upstream 100 bases:

>100_bases
CCATAATCACAATTAATTTGATTGAAATTCAGTCTAAATTTCAATCATGTAATGATCAATTGTGCTAATTTGGTTTCACT
ATTCAGAAAACACGAACAAT

Downstream 100 bases:

>100_bases
ATACAAAAACCACTTCCTGTTTGGGAAGTGGTTCATAGCTTAAAGTGATATAGGTTTAGATTTTACCCACTAGATCAATC
GATGGTGCAAGTGTTGCATC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MMDRLQQFEIFIEVAKRESFSEAALRLDLPRSTVTAAIQNLEASYKVRLFQRTTRRVSLTQDGKRILPECQNLLADYQLL
EQMIQTHHQDYQGIIKVDMPSRISHQIVVPAIGDFFQQYPHIRIQLHSSDHLTNLVEQEVDCVVRVGILENSSLIAKTVG
HLSMVNCASPTYLQTFGVPQQLKDLHQHQLVNYQNGVGDQQGTFFYGDQYIKLNTRLSVNNTEAYIQAARAGLGIIQVPY
YDVYQDLLSGRLVEILKDDVCPSLPLNVLYPNRHYIPRRLDVFMSWLIPLLQRQCCIRS

Sequences:

>Translated_299_residues
MMDRLQQFEIFIEVAKRESFSEAALRLDLPRSTVTAAIQNLEASYKVRLFQRTTRRVSLTQDGKRILPECQNLLADYQLL
EQMIQTHHQDYQGIIKVDMPSRISHQIVVPAIGDFFQQYPHIRIQLHSSDHLTNLVEQEVDCVVRVGILENSSLIAKTVG
HLSMVNCASPTYLQTFGVPQQLKDLHQHQLVNYQNGVGDQQGTFFYGDQYIKLNTRLSVNNTEAYIQAARAGLGIIQVPY
YDVYQDLLSGRLVEILKDDVCPSLPLNVLYPNRHYIPRRLDVFMSWLIPLLQRQCCIRS
>Mature_299_residues
MMDRLQQFEIFIEVAKRESFSEAALRLDLPRSTVTAAIQNLEASYKVRLFQRTTRRVSLTQDGKRILPECQNLLADYQLL
EQMIQTHHQDYQGIIKVDMPSRISHQIVVPAIGDFFQQYPHIRIQLHSSDHLTNLVEQEVDCVVRVGILENSSLIAKTVG
HLSMVNCASPTYLQTFGVPQQLKDLHQHQLVNYQNGVGDQQGTFFYGDQYIKLNTRLSVNNTEAYIQAARAGLGIIQVPY
YDVYQDLLSGRLVEILKDDVCPSLPLNVLYPNRHYIPRRLDVFMSWLIPLLQRQCCIRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=36.9491525423729, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI1786401, Length=284, Percent_Identity=29.5774647887324, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI1787128, Length=284, Percent_Identity=26.4084507042254, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1789639, Length=288, Percent_Identity=24.6527777777778, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787589, Length=283, Percent_Identity=27.208480565371, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI87081978, Length=262, Percent_Identity=29.3893129770992, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1789440, Length=262, Percent_Identity=28.2442748091603, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788481, Length=255, Percent_Identity=26.6666666666667, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1786448, Length=280, Percent_Identity=23.9285714285714, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI145693105, Length=255, Percent_Identity=25.8823529411765, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788706, Length=294, Percent_Identity=23.1292517006803, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790011, Length=295, Percent_Identity=23.0508474576271, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082132, Length=267, Percent_Identity=26.9662921348315, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788748, Length=123, Percent_Identity=31.7073170731707, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34430; Mature: 34430

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDRLQQFEIFIEVAKRESFSEAALRLDLPRSTVTAAIQNLEASYKVRLFQRTTRRVSLT
CCCHHHHHHHHHHHHHHCCHHHHHHEECCCHHHHHHHHHHCCHHHHHHHHHHHHHEEEEC
QDGKRILPECQNLLADYQLLEQMIQTHHQDYQGIIKVDMPSRISHQIVVPAIGDFFQQYP
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEHHHHHHHHHHCC
HIRIQLHSSDHLTNLVEQEVDCVVRVGILENSSLIAKTVGHLSMVNCASPTYLQTFGVPQ
CEEEEEECCHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHCCCCH
QLKDLHQHQLVNYQNGVGDQQGTFFYGDQYIKLNTRLSVNNTEAYIQAARAGLGIIQVPY
HHHHHHHHHHHHHCCCCCCCCCEEEECCEEEEEEEEEEECCHHHHHHHHHCCCCEEECCH
YDVYQDLLSGRLVEILKDDVCPSLPLNVLYPNRHYIPRRLDVFMSWLIPLLQRQCCIRS
HHHHHHHHCCHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMDRLQQFEIFIEVAKRESFSEAALRLDLPRSTVTAAIQNLEASYKVRLFQRTTRRVSLT
CCCHHHHHHHHHHHHHHCCHHHHHHEECCCHHHHHHHHHHCCHHHHHHHHHHHHHEEEEC
QDGKRILPECQNLLADYQLLEQMIQTHHQDYQGIIKVDMPSRISHQIVVPAIGDFFQQYP
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEHHHHHHHHHHCC
HIRIQLHSSDHLTNLVEQEVDCVVRVGILENSSLIAKTVGHLSMVNCASPTYLQTFGVPQ
CEEEEEECCHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHCCCCH
QLKDLHQHQLVNYQNGVGDQQGTFFYGDQYIKLNTRLSVNNTEAYIQAARAGLGIIQVPY
HHHHHHHHHHHHHCCCCCCCCCEEEECCEEEEEEEEEEECCHHHHHHHHHCCCCEEECCH
YDVYQDLLSGRLVEILKDDVCPSLPLNVLYPNRHYIPRRLDVFMSWLIPLLQRQCCIRS
HHHHHHHHCCHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]