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The map label for this gene is rutC

Identifier: 50083324

GI number: 50083324

Start: 35844

End: 36224

Strand: Direct

Name: rutC

Synonym: ACIAD0029

Alternate gene names: 50083324

Gene position: 35844-36224 (Clockwise)

Preceding gene: 50083323

Following gene: 50083325

Centisome position: 1.0

GC content: 46.46

Gene sequence:

>381_bases
ATGCCTAAAGAGATTATTTTACCAGAAGGAACGCCACCACCACTTGCGCCGTATGTGCCAGCGACCAAGGCAGATAATAT
CGTTTATGTTTCTGGCATTTTACCACTGGATGAAAACAACGATGTGGTGCATGTGGGGGATGCGGCAGCACAAACCCGTC
ATGTGCTTGAGACCATCAAGCATATTTTAAGCAATGCAGGAGGCAGTTTAAAAGATGTCACCTTTAATCATATTTTTTTA
CGTGACTGGGCCGATTATCCCGCAATCAATCAGGTGTATGCCGAGTATTTCCCAGAAGAACGTCCAGCCCGCTATTGCGT
GCAGGTGGGACTGGTCAAACCAGATGCCCTGATTGAGATTGCCTCAGTTGCTCATGTTTAA

Upstream 100 bases:

>100_bases
CATCAAAACCTTTTTTGGCTGGGTGTCGGATACACAAAGTTTTGTTAATACGTTTCAACACAATCAACAGCTTGCCAAAA
CTGCTTAAGGGAGAATCAGA

Downstream 100 bases:

>100_bases
TCGACAGTCAAATTTATGACGTGAATAAATAGATAAATAAACCCCATCACCTTGAGTATTTTGGGGTGGAGATCTGCAAT
GACAGTATTAACACAAACTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MPKEIILPEGTPPPLAPYVPATKADNIVYVSGILPLDENNDVVHVGDAAAQTRHVLETIKHILSNAGGSLKDVTFNHIFL
RDWADYPAINQVYAEYFPEERPARYCVQVGLVKPDALIEIASVAHV

Sequences:

>Translated_126_residues
MPKEIILPEGTPPPLAPYVPATKADNIVYVSGILPLDENNDVVHVGDAAAQTRHVLETIKHILSNAGGSLKDVTFNHIFL
RDWADYPAINQVYAEYFPEERPARYCVQVGLVKPDALIEIASVAHV
>Mature_125_residues
PKEIILPEGTPPPLAPYVPATKADNIVYVSGILPLDENNDVVHVGDAAAQTRHVLETIKHILSNAGGSLKDVTFNHIFLR
DWADYPAINQVYAEYFPEERPARYCVQVGLVKPDALIEIASVAHV

Specific function: May reduce aminoacrylate peracid to aminoacrylate. Required to remove a toxic intermediate produce by the pyrimidine nitrogen degradation

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family

Homologues:

Organism=Homo sapiens, GI5032215, Length=122, Percent_Identity=28.6885245901639, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1787245, Length=126, Percent_Identity=58.7301587301587, Blast_Score=176, Evalue=6e-46,
Organism=Escherichia coli, GI87082396, Length=124, Percent_Identity=32.258064516129, Blast_Score=73, Evalue=7e-15,
Organism=Escherichia coli, GI87082213, Length=125, Percent_Identity=32.8, Blast_Score=71, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI25148896, Length=124, Percent_Identity=33.0645161290323, Blast_Score=76, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71982075, Length=124, Percent_Identity=33.0645161290323, Blast_Score=76, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI71982068, Length=122, Percent_Identity=33.6065573770492, Blast_Score=75, Evalue=6e-15,
Organism=Saccharomyces cerevisiae, GI6322138, Length=113, Percent_Identity=34.5132743362832, Blast_Score=74, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=4e-12,
Organism=Drosophila melanogaster, GI19921376, Length=122, Percent_Identity=36.8852459016393, Blast_Score=86, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUTC_ACIAD (Q6FFZ5)

Other databases:

- EMBL:   CR543861
- RefSeq:   YP_044834.1
- ProteinModelPortal:   Q6FFZ5
- SMR:   Q6FFZ5
- STRING:   Q6FFZ5
- GeneID:   2879059
- GenomeReviews:   CR543861_GR
- KEGG:   aci:ACIAD0029
- NMPDR:   fig|62977.3.peg.1094
- eggNOG:   COG0251
- HOGENOM:   HBG695954
- OMA:   VYAEYFP
- PhylomeDB:   Q6FFZ5
- ProtClustDB:   CLSK879923
- BioCyc:   ASP62977:ACIAD0029-MONOMER
- HAMAP:   MF_00831
- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019898
- Gene3D:   G3DSA:3.30.1330.40
- PANTHER:   PTHR11803
- TIGRFAMs:   TIGR03610

Pfam domain/function: PF01042 Ribonuc_L-PSP; SSF55298 YjgF/chorismate_mutase-like

EC number: NA

Molecular weight: Translated: 13841; Mature: 13710

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS01094 UPF0076

Important sites: ACT_SITE 106-106

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKEIILPEGTPPPLAPYVPATKADNIVYVSGILPLDENNDVVHVGDAAAQTRHVLETIK
CCCCEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEECCHHHHHHHHHHHHH
HILSNAGGSLKDVTFNHIFLRDWADYPAINQVYAEYFPEERPARYCVQVGLVKPDALIEI
HHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHEECCCCCHHHHHH
ASVAHV
HHHHCC
>Mature Secondary Structure 
PKEIILPEGTPPPLAPYVPATKADNIVYVSGILPLDENNDVVHVGDAAAQTRHVLETIK
CCCEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEECCHHHHHHHHHHHHH
HILSNAGGSLKDVTFNHIFLRDWADYPAINQVYAEYFPEERPARYCVQVGLVKPDALIEI
HHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHEECCCCCHHHHHH
ASVAHV
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA