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The map label for this gene is rpoD

Identifier: 49481227

GI number: 49481227

Start: 4986769

End: 4987209

Strand: Reverse

Name: rpoD

Synonym: BT9727_4932

Alternate gene names: NA

Gene position: 4987209-4986769 (Counterclockwise)

Preceding gene: 49478930

Following gene: 49478927

Centisome position: 95.22

GC content: 34.92

Gene sequence:

>441_bases
GTGTTGTATGAAGGATTGATTGTGAATCAAATAAAGAAGTTAGGGATTTATCAAGATTATGAAGAGTATTATCAATGTGG
GTTAATTGGTCTTTGGCATGCGTATGAAAGATATGATGCGAAGAAGGGAAGTTTTCCTGCATATGCAGTTATAACTGTAC
GTGGTTATATATTAGAAAGATTGAAAAAAGAGTTTGCAGTGCAAGAAAAGTGTATATGTGTAGGAGAGTATGAGGCTCAC
TTTCATTTTGAAGATATTGAAATGAAGGTGAAGGATTTTATGAGTGTATTAGATGAGAAGGAGAAGTATATTATTTTTGA
ACGTTTTTTTGTAGGAAAGACGATGGGGGAAATCGCTTTAGAGACAGAGATGACCTATTATCAAGTGAGGTGGATATATC
GGCAGGCGCTTGAGAAAATGCGAAATAGCTTAAGAGGATAA

Upstream 100 bases:

>100_bases
TTCTTTATTTTTATATTGTGAAGGTACCGCGGAATACGAGAAAGGTATACCTTTTAGAAACGGGTACTGTGTGAAGCCAA
CGACTTTTACAGAGGCAGTT

Downstream 100 bases:

>100_bases
ATAGTATCATAAGAATGGAAGGCAAGGGATATTGCTTTCCATTCTACTTATTTTGTTAAGGTAGTAAATGTAATAAGAGG
TTTTTAAATTGTAGTGAATC

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: Sigma Factor; RNA Polymerase Sigma-70factor

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MLYEGLIVNQIKKLGIYQDYEEYYQCGLIGLWHAYERYDAKKGSFPAYAVITVRGYILERLKKEFAVQEKCICVGEYEAH
FHFEDIEMKVKDFMSVLDEKEKYIIFERFFVGKTMGEIALETEMTYYQVRWIYRQALEKMRNSLRG

Sequences:

>Translated_146_residues
MLYEGLIVNQIKKLGIYQDYEEYYQCGLIGLWHAYERYDAKKGSFPAYAVITVRGYILERLKKEFAVQEKCICVGEYEAH
FHFEDIEMKVKDFMSVLDEKEKYIIFERFFVGKTMGEIALETEMTYYQVRWIYRQALEKMRNSLRG
>Mature_146_residues
MLYEGLIVNQIKKLGIYQDYEEYYQCGLIGLWHAYERYDAKKGSFPAYAVITVRGYILERLKKEFAVQEKCICVGEYEAH
FHFEDIEMKVKDFMSVLDEKEKYIIFERFFVGKTMGEIALETEMTYYQVRWIYRQALEKMRNSLRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17570; Mature: 17570

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYEGLIVNQIKKLGIYQDYEEYYQCGLIGLWHAYERYDAKKGSFPAYAVITVRGYILER
CCCCHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHH
LKKEFAVQEKCICVGEYEAHFHFEDIEMKVKDFMSVLDEKEKYIIFERFFVGKTMGEIAL
HHHHHHHHHHHEEEECCCCEEEHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHH
ETEMTYYQVRWIYRQALEKMRNSLRG
HCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLYEGLIVNQIKKLGIYQDYEEYYQCGLIGLWHAYERYDAKKGSFPAYAVITVRGYILER
CCCCHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHH
LKKEFAVQEKCICVGEYEAHFHFEDIEMKVKDFMSVLDEKEKYIIFERFFVGKTMGEIAL
HHHHHHHHHHHEEEECCCCEEEHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHH
ETEMTYYQVRWIYRQALEKMRNSLRG
HCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA