Click here to switch to the map view.

The map label for this gene is yubA [H]

Identifier: 49479012

GI number: 49479012

Start: 3213857

End: 3214987

Strand: Reverse

Name: yubA [H]

Synonym: BT9727_3145

Alternate gene names: 49479012

Gene position: 3214987-3213857 (Counterclockwise)

Preceding gene: 49478198

Following gene: 49481689

Centisome position: 61.38

GC content: 31.92

Gene sequence:

>1131_bases
GTGGTTTCGTTGGAGAAAATAAATATAAGAAAAAGAGATAAGCTGAAAAAGTTTTTTAGAGAACACAATTATTTAGCAGT
GTTACTTGGGTTTGCACTATTGTTCATTAATATTTTGTTACTAACAAAAATATCATTTGTTTTTACGCCATTTATCGTCT
TTTTAAAAACAATTTTCTTCCCGGTATTATTAGCGGGCGTACTATTTTACATTTTGCATCCATTCGTTTCACTTTTAGAA
AAGAAAGGTGTTTCAAGAATCGTATCGATAGCCTCGATATACTTAATCGTAATTGGGTTATTTGTGTTTTTAGTTTTAAC
GGTTATTCCAATTATTAAAGATCAAATTGATGCATTAATAGATAACTTACCGTATTTCGGTCATGAAATTGAACGAGCAG
CACGTAGATTCGGAGAAAGTAATTTACTAGGGAAAATTCAGGAGAATTTAAATATTGATGTAGCGAGTATGGTAAAAGAC
TACACAGTTGATTTTACGAAGTCGTTATCATCAGTAACTGGTAATGTAACTGGATTTTTAAGCACTGTGACAGAGGTCGT
TTTAACTTTTGTAATGGTTCCGTTTATATTGTTCTATCTTTTAAAAGATGGTGAGCAATTACCGAATCATTTCTTAAAGT
TTATTTCAGAACAAAGACAACCAGCAGCAATGAGAATACTAGATGATATGCATTATGCGATTAGTTCGTATATTAGAGGA
CAAATTATCGTTAGCTTATTTATCGGTATTATGCTATTAATTGGTTACCTTATTATCGGTATTAAATATGCGGTACTACT
CGCTATTTTAGCGATGATTGTAAATATCGTTCCGTACGTAGGACCAATTATTGCAATTACACCAGCTTTAATTATTGCGT
TTATTGATTCGCCAGGGATGGTTTTAAAGGTAATTATCGTAATGATGGTCGTACAATTAGCAGAAGGTAAATTTATTTCT
CCGCAAGTCATGGGGAAAAAGCTAGATATTCACCCAATTACAATCATTTTTATTATTTTAACTGCCGGAAATTTATTTGG
AATTATGGGGATTATTTTAGCGATTCCAGGATATGCGATATTAAAAGTGTTAGTTACGCACGGTTATCGATTTGTTAAGT
TGAATACGTAG

Upstream 100 bases:

>100_bases
GTTAATTTTTATTGTATCATTTGTAGTGAAAGCTGCAAAGAAATAGATATATAGATTATGATGAAAAGCCCTGAATAAGG
GCTTTTCATCATTCGAAGAG

Downstream 100 bases:

>100_bases
GAAAAAGAGCTAAAACAGTATTATCTGTTTTAGCTCTTTTTTATTAACAATTGATTTGCATATTGGCGTGCCCATTGATC
CGCTTCTAATATAGCATCTA

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MVSLEKINIRKRDKLKKFFREHNYLAVLLGFALLFINILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLE
KKGVSRIVSIASIYLIVIGLFVFLVLTVIPIIKDQIDALIDNLPYFGHEIERAARRFGESNLLGKIQENLNIDVASMVKD
YTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQRQPAAMRILDDMHYAISSYIRG
QIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVPYVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFIS
PQVMGKKLDIHPITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTHGYRFVKLNT

Sequences:

>Translated_376_residues
MVSLEKINIRKRDKLKKFFREHNYLAVLLGFALLFINILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLE
KKGVSRIVSIASIYLIVIGLFVFLVLTVIPIIKDQIDALIDNLPYFGHEIERAARRFGESNLLGKIQENLNIDVASMVKD
YTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQRQPAAMRILDDMHYAISSYIRG
QIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVPYVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFIS
PQVMGKKLDIHPITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTHGYRFVKLNT
>Mature_376_residues
MVSLEKINIRKRDKLKKFFREHNYLAVLLGFALLFINILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLE
KKGVSRIVSIASIYLIVIGLFVFLVLTVIPIIKDQIDALIDNLPYFGHEIERAARRFGESNLLGKIQENLNIDVASMVKD
YTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQRQPAAMRILDDMHYAISSYIRG
QIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVPYVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFIS
PQVMGKKLDIHPITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTHGYRFVKLNT

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=327, Percent_Identity=26.2996941896024, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI87082271, Length=304, Percent_Identity=24.6710526315789, Blast_Score=86, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 42125; Mature: 42125

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSLEKINIRKRDKLKKFFREHNYLAVLLGFALLFINILLLTKISFVFTPFIVFLKTIFF
CCCCHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PVLLAGVLFYILHPFVSLLEKKGVSRIVSIASIYLIVIGLFVFLVLTVIPIIKDQIDALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DNLPYFGHEIERAARRFGESNLLGKIQENLNIDVASMVKDYTVDFTKSLSSVTGNVTGFL
HCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHH
STVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQRQPAAMRILDDMHYAISSYIRG
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
QIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVPYVGPIIAITPALIIAFIDSPGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
VLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFIILTAGNLFGIMGIILAIPGYAI
HHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LKVLVTHGYRFVKLNT
HHHHHHCCCEEEEECC
>Mature Secondary Structure
MVSLEKINIRKRDKLKKFFREHNYLAVLLGFALLFINILLLTKISFVFTPFIVFLKTIFF
CCCCHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PVLLAGVLFYILHPFVSLLEKKGVSRIVSIASIYLIVIGLFVFLVLTVIPIIKDQIDALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DNLPYFGHEIERAARRFGESNLLGKIQENLNIDVASMVKDYTVDFTKSLSSVTGNVTGFL
HCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHH
STVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQRQPAAMRILDDMHYAISSYIRG
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
QIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVPYVGPIIAITPALIIAFIDSPGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
VLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFIILTAGNLFGIMGIILAIPGYAI
HHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LKVLVTHGYRFVKLNT
HHHHHHCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]