Click here to switch to the map view.

The map label for this gene is ydcM [C]

Identifier: 49478785

GI number: 49478785

Start: 4621037

End: 4622167

Strand: Reverse

Name: ydcM [C]

Synonym: BT9727_4575

Alternate gene names: 49478785

Gene position: 4622167-4621037 (Counterclockwise)

Preceding gene: 49478786

Following gene: 49478784

Centisome position: 88.25

GC content: 35.46

Gene sequence:

>1131_bases
ATGATATTGGCGAAGAAAGTTAGACTGATTCCAACGCCTGAACAAGAAAAAGTACTTAGAAACCATGCTGGTGCTGCAAG
ATTCGCTTATAACTATTGTAAAAGAATGAGTGATAGATACTATAAGCTATTTGGAAAATCTGTTTCACAGTTAGCTTTAC
AGAAACGATTTACAAAGATCAAGAAGCGAAAGAGGTATGAGTGGTTAAAAGACATCAACGCACAAGTTCCCAAACAGGCT
TCAAAAGATTTTGATAAGGCAAGGAAGCATTCGTTCAAAAAGTACAAAAATGGTTATCACACTTCTTATAAATCTAAAAA
AGATGTAATCCAAGGATTTTATGCCAATTATGAAAGACTGATTATAGGAAAAAAAGTCGTTCATATTCAGTCTATTGGAG
AAGTGAAAACAAGCCAACAACTACCAAGAAACAAAAAACCATCCAATCCAAGAGTTACCTTTGATGGTCGTCACTGGTGG
ATGAGTGCAGGATTCCAAGAAGACTTTGAATCACAAGAACTAACGAATGAATCGATTGGTGTGGATGTTGGTTTAAAAGA
ACTTTTTGTAGCTTCTAATGGTATGAAAGAACGAAATATAAACAAAGATGCCAAGGTTAAAAAACTTTTGAAAAGGAAAA
AGTCAGCGCAAAGAGATATGTCTAGGAGATTTAAAAAAGGTGTGAAAATTCAATCTGCCGGGTATGAAAAAGCGAAAGCT
GAGCACCTGCGGTTATCTAGGAAAATTACGAATATCCGAAATAACCATATCCATCAAGCAACAGCTAAATTGGTGAAAAC
CAAACCAATGAGGATTGTTGTGGAAGACTTACCTATCTCAAACCTGTTAAAAAACAAAAAACTATCGAAAGCATTTTCAT
TTCAAAAATTACACTTCTTCTTTCAATGTTTATCATACAAGTGCGAGAAGTATGGCATTGCGTATGTAAAAGCTGATAAA
TGGTTCGCTTCAAGCAAGATTTGTTCATGTTGCGGAGTAAAATACGACCATTCAGTTCAACCAGAAGGACAGTGGAGTTT
AAAAATTCGTGAGTGGCGTTGTGCTTCATGCAATAGCCATCACGATAGGGATGTAAATGCGTCGATAAATTTATCAAGAT
GGGTAAAATAA

Upstream 100 bases:

>100_bases
CAGAATTAACAGGTTTGCATCCGAGTAGTCTCAGGAGAATGCTGGTGGAACACGCTACGATTCAGAAGAACAAATCTTTC
ATTAAAGGAGTTACATTCTG

Downstream 100 bases:

>100_bases
AAGCTTGATAATAGGAGGTAACGATACTGCCTCGTGTGGAGTGTTATACCCCTCGTCCCTTTGGGGCTGCGAGAACACGA
TGAAGCGCTAACTTGTGTAA

Product: IS605 family transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MILAKKVRLIPTPEQEKVLRNHAGAARFAYNYCKRMSDRYYKLFGKSVSQLALQKRFTKIKKRKRYEWLKDINAQVPKQA
SKDFDKARKHSFKKYKNGYHTSYKSKKDVIQGFYANYERLIIGKKVVHIQSIGEVKTSQQLPRNKKPSNPRVTFDGRHWW
MSAGFQEDFESQELTNESIGVDVGLKELFVASNGMKERNINKDAKVKKLLKRKKSAQRDMSRRFKKGVKIQSAGYEKAKA
EHLRLSRKITNIRNNHIHQATAKLVKTKPMRIVVEDLPISNLLKNKKLSKAFSFQKLHFFFQCLSYKCEKYGIAYVKADK
WFASSKICSCCGVKYDHSVQPEGQWSLKIREWRCASCNSHHDRDVNASINLSRWVK

Sequences:

>Translated_376_residues
MILAKKVRLIPTPEQEKVLRNHAGAARFAYNYCKRMSDRYYKLFGKSVSQLALQKRFTKIKKRKRYEWLKDINAQVPKQA
SKDFDKARKHSFKKYKNGYHTSYKSKKDVIQGFYANYERLIIGKKVVHIQSIGEVKTSQQLPRNKKPSNPRVTFDGRHWW
MSAGFQEDFESQELTNESIGVDVGLKELFVASNGMKERNINKDAKVKKLLKRKKSAQRDMSRRFKKGVKIQSAGYEKAKA
EHLRLSRKITNIRNNHIHQATAKLVKTKPMRIVVEDLPISNLLKNKKLSKAFSFQKLHFFFQCLSYKCEKYGIAYVKADK
WFASSKICSCCGVKYDHSVQPEGQWSLKIREWRCASCNSHHDRDVNASINLSRWVK
>Mature_376_residues
MILAKKVRLIPTPEQEKVLRNHAGAARFAYNYCKRMSDRYYKLFGKSVSQLALQKRFTKIKKRKRYEWLKDINAQVPKQA
SKDFDKARKHSFKKYKNGYHTSYKSKKDVIQGFYANYERLIIGKKVVHIQSIGEVKTSQQLPRNKKPSNPRVTFDGRHWW
MSAGFQEDFESQELTNESIGVDVGLKELFVASNGMKERNINKDAKVKKLLKRKKSAQRDMSRRFKKGVKIQSAGYEKAKA
EHLRLSRKITNIRNNHIHQATAKLVKTKPMRIVVEDLPISNLLKNKKLSKAFSFQKLHFFFQCLSYKCEKYGIAYVKADK
WFASSKICSCCGVKYDHSVQPEGQWSLKIREWRCASCNSHHDRDVNASINLSRWVK

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=369, Percent_Identity=23.3062330623306, Blast_Score=71, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 43980; Mature: 43980

Theoretical pI: Translated: 10.83; Mature: 10.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCCHHHCCC
>Mature Secondary Structure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CCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]