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The map label for this gene is sdhC [H]

Identifier: 49476235

GI number: 49476235

Start: 1822937

End: 1823338

Strand: Reverse

Name: sdhC [H]

Synonym: BH15800

Alternate gene names: 49476235

Gene position: 1823338-1822937 (Counterclockwise)

Preceding gene: 49476236

Following gene: 49476234

Centisome position: 94.42

GC content: 39.3

Gene sequence:

>402_bases
ATGACAGAGATAACTAAGATAAAACAGCGCCCTCGTTCTCCCCACGTAAGTATTTATCGTTGGACCATCACTATGGCGAT
GTCAATTGCGCATCGTATCACCGGTATAGCACTTTATTTTGGAATGGTCTTCCTCGCTATTTGGTTAATTTCAATCAGCT
GTGGGGTTGAGGCATTTAGAACGGTTCATAGAATTTATACTTCTTTTCCAGGGCTTTGCATTTTGTTTCTTTATACTCTT
GCTGGGATTCATCACATGGTGGGCGGTGTTCGCCACATTGTTTGGGATATAAAGCCTTGCCTTTTGGCTAAAGAAAAGGC
AACAATGACTGCATGGGCAACAGTTTTTATTTCTCTTATTATTACTTTTACGATTTGGATTATTGGATATAATATTGTCT
AG

Upstream 100 bases:

>100_bases
TTCGAGGTGCCAAAAGTAGAAATGATAGTGTGCTTGGTCATTTTGTGTGGGGCCTTTTGTTCATAATGCGGTTGCAGTAA
AAACCAGGTCAGGATATTTT

Downstream 100 bases:

>100_bases
TTGGGGGTGGAAAGAGATATGAAAAAAGATTTTCGAACGGAACTTGGGAAAGTCCGGGGGCGTGGAAGCGCACATGAAGG
AACAGAGCATTTTTGGCTAC

Product: succinate dehydrogenase cytochrome b560 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MTEITKIKQRPRSPHVSIYRWTITMAMSIAHRITGIALYFGMVFLAIWLISISCGVEAFRTVHRIYTSFPGLCILFLYTL
AGIHHMVGGVRHIVWDIKPCLLAKEKATMTAWATVFISLIITFTIWIIGYNIV

Sequences:

>Translated_133_residues
MTEITKIKQRPRSPHVSIYRWTITMAMSIAHRITGIALYFGMVFLAIWLISISCGVEAFRTVHRIYTSFPGLCILFLYTL
AGIHHMVGGVRHIVWDIKPCLLAKEKATMTAWATVFISLIITFTIWIIGYNIV
>Mature_132_residues
TEITKIKQRPRSPHVSIYRWTITMAMSIAHRITGIALYFGMVFLAIWLISISCGVEAFRTVHRIYTSFPGLCILFLYTLA
GIHHMVGGVRHIVWDIKPCLLAKEKATMTAWATVFISLIITFTIWIIGYNIV

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 15187; Mature: 15055

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEITKIKQRPRSPHVSIYRWTITMAMSIAHRITGIALYFGMVFLAIWLISISCGVEAFR
CCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVHRIYTSFPGLCILFLYTLAGIHHMVGGVRHIVWDIKPCLLAKEKATMTAWATVFISLI
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITFTIWIIGYNIV
HHHHHHHHHHCCC
>Mature Secondary Structure 
TEITKIKQRPRSPHVSIYRWTITMAMSIAHRITGIALYFGMVFLAIWLISISCGVEAFR
CCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVHRIYTSFPGLCILFLYTLAGIHHMVGGVRHIVWDIKPCLLAKEKATMTAWATVFISLI
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITFTIWIIGYNIV
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA