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The map label for this gene is sdhD [H]

Identifier: 49476234

GI number: 49476234

Start: 1822532

End: 1822918

Strand: Reverse

Name: sdhD [H]

Synonym: BH15790

Alternate gene names: 49476234

Gene position: 1822918-1822532 (Counterclockwise)

Preceding gene: 49476235

Following gene: 49476233

Centisome position: 94.4

GC content: 38.24

Gene sequence:

>387_bases
ATGAAAAAAGATTTTCGAACGGAACTTGGGAAAGTCCGGGGGCGTGGAAGCGCACATGAAGGAACAGAGCATTTTTGGCT
ACAGCGTTTAACAGGTTTTATAAATCTGCCACTTTTGATATTTTTCATTGTTCTTATTCTCTCGCTTGTTGGAAAAGACT
ACAGCATTATACGCGCTCGGCTTGCGCATCCTGTTGTCGCTGTTTTAATGGGATTACTTACTCTTTCAGTCCTTTATCAT
ATGAAACTTGGAATGCAGGTGGTTATTGAAGATTATATTCCCCGTGAAGGTTTACGGATAATTTTTTTGGTCTTAAATAT
TTTGTTTTGTTTTGTTTTGGGAGGGATCATCGTTTTTGCTCTTTTGAAAATTGCAATAGGGGGTTAA

Upstream 100 bases:

>100_bases
AACAATGACTGCATGGGCAACAGTTTTTATTTCTCTTATTATTACTTTTACGATTTGGATTATTGGATATAATATTGTCT
AGTTGGGGGTGGAAAGAGAT

Downstream 100 bases:

>100_bases
AAATATGGTGAGCACAGGATCATCTCTGGGCGCTAGAGCAGGCAATGCCCCTTATCGCACTGTAGATCATAAGTTTGATG
TTGTTGTTGTTGGGGCAGGC

Product: succinate dehydrogenase hydrophobic membrane anchor protein

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MKKDFRTELGKVRGRGSAHEGTEHFWLQRLTGFINLPLLIFFIVLILSLVGKDYSIIRARLAHPVVAVLMGLLTLSVLYH
MKLGMQVVIEDYIPREGLRIIFLVLNILFCFVLGGIIVFALLKIAIGG

Sequences:

>Translated_128_residues
MKKDFRTELGKVRGRGSAHEGTEHFWLQRLTGFINLPLLIFFIVLILSLVGKDYSIIRARLAHPVVAVLMGLLTLSVLYH
MKLGMQVVIEDYIPREGLRIIFLVLNILFCFVLGGIIVFALLKIAIGG
>Mature_128_residues
MKKDFRTELGKVRGRGSAHEGTEHFWLQRLTGFINLPLLIFFIVLILSLVGKDYSIIRARLAHPVVAVLMGLLTLSVLYH
MKLGMQVVIEDYIPREGLRIIFLVLNILFCFVLGGIIVFALLKIAIGG

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 14391; Mature: 14391

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKDFRTELGKVRGRGSAHEGTEHFWLQRLTGFINLPLLIFFIVLILSLVGKDYSIIRAR
CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LAHPVVAVLMGLLTLSVLYHMKLGMQVVIEDYIPREGLRIIFLVLNILFCFVLGGIIVFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLKIAIGG
HHHHHCCC
>Mature Secondary Structure
MKKDFRTELGKVRGRGSAHEGTEHFWLQRLTGFINLPLLIFFIVLILSLVGKDYSIIRAR
CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LAHPVVAVLMGLLTLSVLYHMKLGMQVVIEDYIPREGLRIIFLVLNILFCFVLGGIIVFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLKIAIGG
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA