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The map label for this gene is nodN [H]

Identifier: 49475990

GI number: 49475990

Start: 1447916

End: 1448395

Strand: Reverse

Name: nodN [H]

Synonym: BH12950

Alternate gene names: 49475990

Gene position: 1448395-1447916 (Counterclockwise)

Preceding gene: 49475995

Following gene: 49475986

Centisome position: 75.01

GC content: 40.0

Gene sequence:

>480_bases
ATGCAACAAAAAATAGCAGTACAAGATGTAGCTAATTTTATTGGGAAAGAAATAGGATTATCGCGGTGGCGTCTTGTTAC
GCAGGATATGATTAATCAATTTGCATGCGCAACAGATGATCATCAATGGATCCACGTAGATGAGGAAAAGGCTAAAAAAA
CGCATTTCGGTGGCACTATTGCTCATGGGTTTTTAACATTATCACTTTTGTCTACGCTAGCTTATGAGGCACTACCGGAG
TTGGAAGGTACAACAATGGGCATTAATTATGGTTTTGATAAAGTACGCTTTATGAGTCCCGTTAAAACAGGCACAAGGGT
ACGTGCGCGTTTTGTTTTAAATGATGCCGAGATTCGTCCTTCTGGACGGGTGGTTTTTCATTATGGAGCTACGATGGAAA
TTGAACAATTAAAAAAACCAGCTCTTACTGCCCAGTGGCTTGTGGTTGCTATGGTTGGAGAGAAGTACATAAATTCTTAA

Upstream 100 bases:

>100_bases
TTAAGACAGTTCATCTTTTATTCTTGATGCTCTAATCAATGGGTTTTATAAAAGCAAGAGGTTTGGGGTAGTTTTACCAA
ATAAAACAGGAAAAGGCGTT

Downstream 100 bases:

>100_bases
ATTGTTTTAATGTTGTGTTTTATCCACTTTTTGTGCAATTGTTTCAGAAGACCCTTAAGGGAATAATATGAAGAGTGATC
AAAAGGATATAACTATTGTC

Product: nodulation protein n

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MQQKIAVQDVANFIGKEIGLSRWRLVTQDMINQFACATDDHQWIHVDEEKAKKTHFGGTIAHGFLTLSLLSTLAYEALPE
LEGTTMGINYGFDKVRFMSPVKTGTRVRARFVLNDAEIRPSGRVVFHYGATMEIEQLKKPALTAQWLVVAMVGEKYINS

Sequences:

>Translated_159_residues
MQQKIAVQDVANFIGKEIGLSRWRLVTQDMINQFACATDDHQWIHVDEEKAKKTHFGGTIAHGFLTLSLLSTLAYEALPE
LEGTTMGINYGFDKVRFMSPVKTGTRVRARFVLNDAEIRPSGRVVFHYGATMEIEQLKKPALTAQWLVVAMVGEKYINS
>Mature_159_residues
MQQKIAVQDVANFIGKEIGLSRWRLVTQDMINQFACATDDHQWIHVDEEKAKKTHFGGTIAHGFLTLSLLSTLAYEALPE
LEGTTMGINYGFDKVRFMSPVKTGTRVRARFVLNDAEIRPSGRVVFHYGATMEIEQLKKPALTAQWLVVAMVGEKYINS

Specific function: Involved in the production of the root hair deformation (HAD) factor specifically on medicago [H]

COG id: COG2030

COG function: function code I; Acyl dehydratase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To the R.leguminosarum biovar viciae counterpart [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002539 [H]

Pfam domain/function: PF01575 MaoC_dehydratas [H]

EC number: NA

Molecular weight: Translated: 17902; Mature: 17902

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQKIAVQDVANFIGKEIGLSRWRLVTQDMINQFACATDDHQWIHVDEEKAKKTHFGGTI
CCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHCCCCHH
AHGFLTLSLLSTLAYEALPELEGTTMGINYGFDKVRFMSPVKTGTRVRARFVLNDAEIRP
HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCEEEEEEEEECCEECC
SGRVVFHYGATMEIEQLKKPALTAQWLVVAMVGEKYINS
CCCEEEEECCCEEHHHHCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQQKIAVQDVANFIGKEIGLSRWRLVTQDMINQFACATDDHQWIHVDEEKAKKTHFGGTI
CCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHCCCCHH
AHGFLTLSLLSTLAYEALPELEGTTMGINYGFDKVRFMSPVKTGTRVRARFVLNDAEIRP
HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCEEEEEEEEECCEECC
SGRVVFHYGATMEIEQLKKPALTAQWLVVAMVGEKYINS
CCCEEEEECCCEEHHHHCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1909418; 11481432 [H]