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The map label for this gene is oppD [H]

Identifier: 49475931

GI number: 49475931

Start: 1352971

End: 1353846

Strand: Reverse

Name: oppD [H]

Synonym: BH12150

Alternate gene names: 49475931

Gene position: 1353846-1352971 (Counterclockwise)

Preceding gene: 49475932

Following gene: 49475930

Centisome position: 70.11

GC content: 41.32

Gene sequence:

>876_bases
ATGGATAAAAAATTATTAGAGATAGAAGATTTACGTGTTTCTTTTCCTACAACGCGCGGCGTTTTAGAAGCTGTACGTGG
CGTTAGCTTCTCCGTGGGGAAAGAAAAAATCGGAATTGTTGGGGAGTCTGGGTCTGGAAAATCAATGACTGGACGCGCAA
TACTCAAATTGAGCCCAAGAGCAGCAATCGTCAAAGCTAAAAAAATGCGCTTTGATGATGTCGATTTATTGTCAGCAAGT
GAATCGCGGATGCAGACTATTCGCGGTAAGCGTATTTCGATGATTTTACAAGATCCTAAATATTCGCTTAATCCATTAGT
GCGTATTGGGGATCAGATCATGGAGGCGTATTGTATTCATCATCGTGTTTCAAAAGTTGAGGCACGGGAAAAAACAATTT
CTATGTTGGAATCCGTTCATATTCGTGATCCAGAACATGTGATGAGGCTCTTTCCTCATGAAATATCAGGTGGTATGGGG
CAGCGGGTGATGATTGCTATGATGCTTATTCCTGAACCTGATTTAATTATCGCCGATGAGCCAACTTCTGCACTTGATGT
TACGGTGAGATGTCAAGTTTTGTCAGTGTTAGATGAACTTGTAACAAAGTCTGGGACAGGACTTATTTTTATTAGCCATG
ATTTGAATATGATTGCTGATTTTTGTGATCGTGTTTTGGTGATGTATGCCGGTCGGGTATTAGAGGAATTGCCTGCGCGT
GATTTATCTTGCGCTTGTCATCCCTATACTAAAGCTTTACTAGCTAGTTTGCCACGGCTTGATAATCCTGTTGACGTTTT
AGCTGTTCCTGAACGCGATCCTAATTGGTTGCATAATCCTACGATTGTTAATGGTGTTGAAGGAGTTACTTCGTGA

Upstream 100 bases:

>100_bases
AGTTGGTGGTTGGCAGCAATGCCCGGGTGTGCAATATTGTTTGCAAGCCTTGCATTCAACCTTTTAGGTGATGGACTTCG
TGATATATTGGATCCACGCA

Downstream 100 bases:

>100_bases
CCAATTGTGACAATATACTCGATATTTCTAATTTATCTGTAACCTTTGGGCATAAGCACAAGGCAGTAACGGTTGTAAAA
AATGTTAATTTTCATATTAA

Product: oligopeptide transport ATP-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: Stage 0 sporulation protein KD [H]

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MDKKLLEIEDLRVSFPTTRGVLEAVRGVSFSVGKEKIGIVGESGSGKSMTGRAILKLSPRAAIVKAKKMRFDDVDLLSAS
ESRMQTIRGKRISMILQDPKYSLNPLVRIGDQIMEAYCIHHRVSKVEAREKTISMLESVHIRDPEHVMRLFPHEISGGMG
QRVMIAMMLIPEPDLIIADEPTSALDVTVRCQVLSVLDELVTKSGTGLIFISHDLNMIADFCDRVLVMYAGRVLEELPAR
DLSCACHPYTKALLASLPRLDNPVDVLAVPERDPNWLHNPTIVNGVEGVTS

Sequences:

>Translated_291_residues
MDKKLLEIEDLRVSFPTTRGVLEAVRGVSFSVGKEKIGIVGESGSGKSMTGRAILKLSPRAAIVKAKKMRFDDVDLLSAS
ESRMQTIRGKRISMILQDPKYSLNPLVRIGDQIMEAYCIHHRVSKVEAREKTISMLESVHIRDPEHVMRLFPHEISGGMG
QRVMIAMMLIPEPDLIIADEPTSALDVTVRCQVLSVLDELVTKSGTGLIFISHDLNMIADFCDRVLVMYAGRVLEELPAR
DLSCACHPYTKALLASLPRLDNPVDVLAVPERDPNWLHNPTIVNGVEGVTS
>Mature_291_residues
MDKKLLEIEDLRVSFPTTRGVLEAVRGVSFSVGKEKIGIVGESGSGKSMTGRAILKLSPRAAIVKAKKMRFDDVDLLSAS
ESRMQTIRGKRISMILQDPKYSLNPLVRIGDQIMEAYCIHHRVSKVEAREKTISMLESVHIRDPEHVMRLFPHEISGGMG
QRVMIAMMLIPEPDLIIADEPTSALDVTVRCQVLSVLDELVTKSGTGLIFISHDLNMIADFCDRVLVMYAGRVLEELPAR
DLSCACHPYTKALLASLPRLDNPVDVLAVPERDPNWLHNPTIVNGVEGVTS

Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI48994883, Length=279, Percent_Identity=45.5197132616487, Blast_Score=238, Evalue=3e-64,
Organism=Escherichia coli, GI1787759, Length=284, Percent_Identity=44.0140845070423, Blast_Score=217, Evalue=6e-58,
Organism=Escherichia coli, GI1789963, Length=266, Percent_Identity=43.2330827067669, Blast_Score=206, Evalue=1e-54,
Organism=Escherichia coli, GI145693107, Length=279, Percent_Identity=40.1433691756272, Blast_Score=201, Evalue=6e-53,
Organism=Escherichia coli, GI1788506, Length=264, Percent_Identity=40.9090909090909, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1787548, Length=261, Percent_Identity=37.9310344827586, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1789962, Length=274, Percent_Identity=38.3211678832117, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1787500, Length=271, Percent_Identity=41.6974169741697, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1787758, Length=274, Percent_Identity=35.4014598540146, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1789890, Length=234, Percent_Identity=32.0512820512821, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787547, Length=265, Percent_Identity=30.9433962264151, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI48994997, Length=260, Percent_Identity=31.5384615384615, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1789032, Length=249, Percent_Identity=30.1204819277108, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1789891, Length=201, Percent_Identity=30.8457711442786, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788225, Length=222, Percent_Identity=30.1801801801802, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787089, Length=220, Percent_Identity=29.5454545454545, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI87081834, Length=238, Percent_Identity=30.2521008403361, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1789672, Length=244, Percent_Identity=28.6885245901639, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1786872, Length=198, Percent_Identity=30.8080808080808, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787370, Length=209, Percent_Identity=28.2296650717703, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788761, Length=232, Percent_Identity=27.1551724137931, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787105, Length=236, Percent_Identity=28.3898305084746, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788644, Length=168, Percent_Identity=30.3571428571429, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786703, Length=241, Percent_Identity=30.2904564315353, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786398, Length=273, Percent_Identity=26.007326007326, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787712, Length=224, Percent_Identity=29.0178571428571, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786319, Length=269, Percent_Identity=26.3940520446097, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787029, Length=205, Percent_Identity=30.2439024390244, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789586, Length=266, Percent_Identity=27.0676691729323, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786345, Length=215, Percent_Identity=28.8372093023256, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1789991, Length=247, Percent_Identity=26.7206477732794, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081791, Length=233, Percent_Identity=27.0386266094421, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790739, Length=243, Percent_Identity=26.7489711934156, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1789873, Length=215, Percent_Identity=28.3720930232558, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48994943, Length=233, Percent_Identity=27.0386266094421, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790467, Length=210, Percent_Identity=27.1428571428571, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790162, Length=226, Percent_Identity=23.0088495575221, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788472, Length=105, Percent_Identity=32.3809523809524, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI87081709, Length=208, Percent_Identity=26.4423076923077, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI48995001, Length=227, Percent_Identity=24.6696035242291, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI193209708, Length=246, Percent_Identity=32.1138211382114, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI25146777, Length=236, Percent_Identity=26.6949152542373, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193202349, Length=240, Percent_Identity=27.0833333333333, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193211015, Length=234, Percent_Identity=26.0683760683761, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI71996809, Length=234, Percent_Identity=26.0683760683761, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI193211017, Length=234, Percent_Identity=26.0683760683761, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6322980, Length=252, Percent_Identity=29.3650793650794, Blast_Score=73, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6324498, Length=251, Percent_Identity=27.8884462151394, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 32207; Mature: 32207

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKKLLEIEDLRVSFPTTRGVLEAVRGVSFSVGKEKIGIVGESGSGKSMTGRAILKLSPR
CCCCCEEHHHCEEECCCHHHHHHHHHCCCEECCCCEEEEEECCCCCCCCCCCEEEEECCH
AAIVKAKKMRFDDVDLLSASESRMQTIRGKRISMILQDPKYSLNPLVRIGDQIMEAYCIH
HHHHHHHHCCCCCCHHHCCCHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
HRVSKVEAREKTISMLESVHIRDPEHVMRLFPHEISGGMGQRVMIAMMLIPEPDLIIADE
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCCCCHHHHEEEEECCCCCEEEECC
PTSALDVTVRCQVLSVLDELVTKSGTGLIFISHDLNMIADFCDRVLVMYAGRVLEELPAR
CCCCEEHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCC
DLSCACHPYTKALLASLPRLDNPVDVLAVPERDPNWLHNPTIVNGVEGVTS
CCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCEECCCCCCCC
>Mature Secondary Structure
MDKKLLEIEDLRVSFPTTRGVLEAVRGVSFSVGKEKIGIVGESGSGKSMTGRAILKLSPR
CCCCCEEHHHCEEECCCHHHHHHHHHCCCEECCCCEEEEEECCCCCCCCCCCEEEEECCH
AAIVKAKKMRFDDVDLLSASESRMQTIRGKRISMILQDPKYSLNPLVRIGDQIMEAYCIH
HHHHHHHHCCCCCCHHHCCCHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
HRVSKVEAREKTISMLESVHIRDPEHVMRLFPHEISGGMGQRVMIAMMLIPEPDLIIADE
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCCCCHHHHEEEEECCCCCEEEECC
PTSALDVTVRCQVLSVLDELVTKSGTGLIFISHDLNMIADFCDRVLVMYAGRVLEELPAR
CCCCEEHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCC
DLSCACHPYTKALLASLPRLDNPVDVLAVPERDPNWLHNPTIVNGVEGVTS
CCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1901616; 1899858; 9384377 [H]