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The map label for this gene is ddpC [H]

Identifier: 49475932

GI number: 49475932

Start: 1353839

End: 1354771

Strand: Reverse

Name: ddpC [H]

Synonym: BH12160

Alternate gene names: 49475932

Gene position: 1354771-1353839 (Counterclockwise)

Preceding gene: 49475933

Following gene: 49475931

Centisome position: 70.16

GC content: 40.73

Gene sequence:

>933_bases
ATGACTACTTCAATGAATCATCATAAACCGCAATCTTCATTTTCTTTAAGTTATTGGTTATATGAAGCTGTTCCGCGGTC
AATAGTTCAAGCGAACATACAAAAAATTTATCATTCAGTGATCAAATTCTTTCATAATTTTTCGGCCGTATTCGGTCTAA
TTATTATTTTTGTTATTATTTTATGTGCAGTTTTTGCTCCTTGGATTGCTACCCATGATTTTATGAGCAATGATCTTGCT
CATCGGTTGCAGCCACCATCTATGTTGCATTATTTCGGAACAGATGAATTAGGGCGTGACATTTTTAGTCGTCTCGTTTT
TGGTGCGCGGATTACTCTTTATATTGTTTTTCTTACTACAATTATTGTGGGGCCGATAGGGCTGATTGTTGGAACTCTCT
CTGGTTATATAGGGGGATGGGTTGATACGCTTCTTATGCGCATGGTTGATATTTTTCTCGCTTTTCCAGCTTTGATTTTA
GCTCTTGCTTTTGCAGCAGCATTGGGACCCGGCATTGAAAATGCATCCATTGCTATTTCAATTGCAGCTTGGCCACCAAT
AGCCCGTTTAGCGCGTGCTGAGACTTTGACGATACGTTCATCTGATTATATTTCTGCAATTCGCTTGCAAGGAGCATCTC
CTTGGCGCATTATTTTTTTTCATGTTATGCCGATGTGTATTCCTTCAGTGGTGGTACGGTTAACATTAGATATGTCTGGA
ATTATTTTAACGGCTGCGGGTCTTGGTTTTTTAGGGTTGGGAGCTCAACTCCCAAGTCCTGAATGGGGAGCAATGCTTTC
GACCGGTCGTGAGTTTATGATGACAAGTTGGTGGTTGGCAGCAATGCCCGGGTGTGCAATATTGTTTGCAAGCCTTGCAT
TCAACCTTTTAGGTGATGGACTTCGTGATATATTGGATCCACGCAATGGATAA

Upstream 100 bases:

>100_bases
CAGTTGTTGGGTGCACGCTGCTAGTAGGGGGGCTCTTTGTTGCCATTAATTTATTTTCTGATTTACTTTATCGCATCTTT
GATCCAAGGACACGCTGAAT

Downstream 100 bases:

>100_bases
AAAATTATTAGAGATAGAAGATTTACGTGTTTCTTTTCCTACAACGCGCGGCGTTTTAGAAGCTGTACGTGGCGTTAGCT
TCTCCGTGGGGAAAGAAAAA

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MTTSMNHHKPQSSFSLSYWLYEAVPRSIVQANIQKIYHSVIKFFHNFSAVFGLIIIFVIILCAVFAPWIATHDFMSNDLA
HRLQPPSMLHYFGTDELGRDIFSRLVFGARITLYIVFLTTIIVGPIGLIVGTLSGYIGGWVDTLLMRMVDIFLAFPALIL
ALAFAAALGPGIENASIAISIAAWPPIARLARAETLTIRSSDYISAIRLQGASPWRIIFFHVMPMCIPSVVVRLTLDMSG
IILTAAGLGFLGLGAQLPSPEWGAMLSTGREFMMTSWWLAAMPGCAILFASLAFNLLGDGLRDILDPRNG

Sequences:

>Translated_310_residues
MTTSMNHHKPQSSFSLSYWLYEAVPRSIVQANIQKIYHSVIKFFHNFSAVFGLIIIFVIILCAVFAPWIATHDFMSNDLA
HRLQPPSMLHYFGTDELGRDIFSRLVFGARITLYIVFLTTIIVGPIGLIVGTLSGYIGGWVDTLLMRMVDIFLAFPALIL
ALAFAAALGPGIENASIAISIAAWPPIARLARAETLTIRSSDYISAIRLQGASPWRIIFFHVMPMCIPSVVVRLTLDMSG
IILTAAGLGFLGLGAQLPSPEWGAMLSTGREFMMTSWWLAAMPGCAILFASLAFNLLGDGLRDILDPRNG
>Mature_309_residues
TTSMNHHKPQSSFSLSYWLYEAVPRSIVQANIQKIYHSVIKFFHNFSAVFGLIIIFVIILCAVFAPWIATHDFMSNDLAH
RLQPPSMLHYFGTDELGRDIFSRLVFGARITLYIVFLTTIIVGPIGLIVGTLSGYIGGWVDTLLMRMVDIFLAFPALILA
LAFAAALGPGIENASIAISIAAWPPIARLARAETLTIRSSDYISAIRLQGASPWRIIFFHVMPMCIPSVVVRLTLDMSGI
ILTAAGLGFLGLGAQLPSPEWGAMLSTGREFMMTSWWLAAMPGCAILFASLAFNLLGDGLRDILDPRNG

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=257, Percent_Identity=47.0817120622568, Blast_Score=253, Evalue=1e-68,
Organism=Escherichia coli, GI1787054, Length=268, Percent_Identity=43.2835820895522, Blast_Score=214, Evalue=7e-57,
Organism=Escherichia coli, GI1789964, Length=282, Percent_Identity=43.6170212765958, Blast_Score=201, Evalue=4e-53,
Organism=Escherichia coli, GI1789889, Length=243, Percent_Identity=39.917695473251, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1787549, Length=267, Percent_Identity=38.2022471910112, Blast_Score=164, Evalue=7e-42,
Organism=Escherichia coli, GI1787498, Length=270, Percent_Identity=35.9259259259259, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1788505, Length=226, Percent_Identity=30.5309734513274, Blast_Score=107, Evalue=9e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34008; Mature: 33877

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSMNHHKPQSSFSLSYWLYEAVPRSIVQANIQKIYHSVIKFFHNFSAVFGLIIIFVII
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LCAVFAPWIATHDFMSNDLAHRLQPPSMLHYFGTDELGRDIFSRLVFGARITLYIVFLTT
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IIVGPIGLIVGTLSGYIGGWVDTLLMRMVDIFLAFPALILALAFAAALGPGIENASIAIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
IAAWPPIARLARAETLTIRSSDYISAIRLQGASPWRIIFFHVMPMCIPSVVVRLTLDMSG
EECCCHHHHHHHHHHEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCH
IILTAAGLGFLGLGAQLPSPEWGAMLSTGREFMMTSWWLAAMPGCAILFASLAFNLLGDG
HHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LRDILDPRNG
HHHHCCCCCC
>Mature Secondary Structure 
TTSMNHHKPQSSFSLSYWLYEAVPRSIVQANIQKIYHSVIKFFHNFSAVFGLIIIFVII
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LCAVFAPWIATHDFMSNDLAHRLQPPSMLHYFGTDELGRDIFSRLVFGARITLYIVFLTT
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IIVGPIGLIVGTLSGYIGGWVDTLLMRMVDIFLAFPALILALAFAAALGPGIENASIAIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
IAAWPPIARLARAETLTIRSSDYISAIRLQGASPWRIIFFHVMPMCIPSVVVRLTLDMSG
EECCCHHHHHHHHHHEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCH
IILTAAGLGFLGLGAQLPSPEWGAMLSTGREFMMTSWWLAAMPGCAILFASLAFNLLGDG
HHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LRDILDPRNG
HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]