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The map label for this gene is rarA [H]

Identifier: 49475767

GI number: 49475767

Start: 1139342

End: 1140661

Strand: Reverse

Name: rarA [H]

Synonym: BH10240

Alternate gene names: 49475767

Gene position: 1140661-1139342 (Counterclockwise)

Preceding gene: 49475768

Following gene: 49475766

Centisome position: 59.07

GC content: 42.35

Gene sequence:

>1320_bases
TTGAATAAAGATCTTTTTATTTCGTCTTTTGATCATCGGGTTTATAAAAAGCAGCCGCTTGCAGAAAGGATGCGTCCTCA
CTCCCTTAATGATGTAACGGGACAAAGTCATTTGGTAGGAGAGAAAGGTTTGCTTTCACGGATAGTGGCAGCTGGCTCAA
TTGGTTCGATGATTTTTTGGGGGCCTCCAGGGACAGGAAAAACAACAGTTGCGCGTTTATTAGCACTTGAAACAAATTTC
GCTTTTGAACAAGTTTCTGCTATTTTTACTGGGGTTGCTGAGCTTAAGAAGATTTTTGAAAGTGCTCAGGCGCGTTTTAT
GTCTGGAAGTCAAACAGTTTTGTTTGTCGACGAAATTCATCGCTTTAATCGTGCACAGCAGGATAGTTTTCTTCCCGTTA
TGGAAGATGGTACTGTTATTCTTATAGGGGCAACAACGGAGAATCCTTCGTTTGAACTTAATGCTGCCCTTCTTTCTCGT
GCACGTGTTTTGACATTTCTTCCACATGACAATGAAAGTTTGGGCATGCTTTTGAAACGTGCTGAGGCATTGGAAGAAAA
AACTCTTCCCTTGGATGATAACGCCAGAGACGTTTTGATAGACATGTCTGATGGTGATGCACGGGCAGCGTTAACATTGG
CAGAGGAAGTTTGGTCGGTTGCGCGACCGGGAGAGATATTTGATGCTGCTGCTTTGCGAAAAATCGTTCAACGTCGTGCT
CCAATTTATGATAAAGGACGAGATGGTCACTATAATCTCATTTCAGCGTTACATAAATCAGTTCGTGGATCTGATCCTGA
TGCTGCACTTTATTATTTGGCACGTATGTTTGATGCTGGTGAAGATCCTCTTTATATTGGGCGAAGATTAGTTCGTATGG
CTGTTGAAGATGTTGGTTTGGCAGATCCGCAAGCTCTTGTCATTTGTAATGCTGCAAAGGATGCTTACGATTATTTAGGA
TCACCAGAGGGAGAGTTGGCTTTAGCACAAGCATGTCTTTATGTTGCAACGGCACCAAAATCAAATGCAACCTATCTTGC
GTATAAGGCAGCTATGCGTTGTGCACGCAAAAATGGTTCTTTGCCTCCCCCTAAGCATATTCTTAATGCACCTACAAAAT
TTATGAAGGAAGAAGGGTATGGGCATGGTTATTGTTATGATCATGATGAACCAGATGCTTTTTCGGGACAGGAATATTTT
CCTGAAAAACTTGGGCGTCAGAGTTATTATCAACCAGTTGAGCGTGGTTTTGAGCGTGAGATTGCAAAGCGTCTTGAGTG
GTGGAAGCAATTGCGCAAAAAACGCGCTAATCAAAAATGA

Upstream 100 bases:

>100_bases
AGTTGAAAAAGATTCTTATGCAAGATCGTCCGCGGGTTTGGCAATTGGAATATGAACGTGATGGTATGTATATTCGCCAA
TTTATTCGCTGAGGTTTTTT

Downstream 100 bases:

>100_bases
AATTTTAGTTGAGACAAGTTTTTTATTGGTCTTGAACCTATTTTACATCAATTGTGTGATTATAATTTTATTCATTGTCT
ATGTTATGTCTTAAACGCTT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MNKDLFISSFDHRVYKKQPLAERMRPHSLNDVTGQSHLVGEKGLLSRIVAAGSIGSMIFWGPPGTGKTTVARLLALETNF
AFEQVSAIFTGVAELKKIFESAQARFMSGSQTVLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSR
ARVLTFLPHDNESLGMLLKRAEALEEKTLPLDDNARDVLIDMSDGDARAALTLAEEVWSVARPGEIFDAAALRKIVQRRA
PIYDKGRDGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYIGRRLVRMAVEDVGLADPQALVICNAAKDAYDYLG
SPEGELALAQACLYVATAPKSNATYLAYKAAMRCARKNGSLPPPKHILNAPTKFMKEEGYGHGYCYDHDEPDAFSGQEYF
PEKLGRQSYYQPVERGFEREIAKRLEWWKQLRKKRANQK

Sequences:

>Translated_439_residues
MNKDLFISSFDHRVYKKQPLAERMRPHSLNDVTGQSHLVGEKGLLSRIVAAGSIGSMIFWGPPGTGKTTVARLLALETNF
AFEQVSAIFTGVAELKKIFESAQARFMSGSQTVLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSR
ARVLTFLPHDNESLGMLLKRAEALEEKTLPLDDNARDVLIDMSDGDARAALTLAEEVWSVARPGEIFDAAALRKIVQRRA
PIYDKGRDGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYIGRRLVRMAVEDVGLADPQALVICNAAKDAYDYLG
SPEGELALAQACLYVATAPKSNATYLAYKAAMRCARKNGSLPPPKHILNAPTKFMKEEGYGHGYCYDHDEPDAFSGQEYF
PEKLGRQSYYQPVERGFEREIAKRLEWWKQLRKKRANQK
>Mature_439_residues
MNKDLFISSFDHRVYKKQPLAERMRPHSLNDVTGQSHLVGEKGLLSRIVAAGSIGSMIFWGPPGTGKTTVARLLALETNF
AFEQVSAIFTGVAELKKIFESAQARFMSGSQTVLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSR
ARVLTFLPHDNESLGMLLKRAEALEEKTLPLDDNARDVLIDMSDGDARAALTLAEEVWSVARPGEIFDAAALRKIVQRRA
PIYDKGRDGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYIGRRLVRMAVEDVGLADPQALVICNAAKDAYDYLG
SPEGELALAQACLYVATAPKSNATYLAYKAAMRCARKNGSLPPPKHILNAPTKFMKEEGYGHGYCYDHDEPDAFSGQEYF
PEKLGRQSYYQPVERGFEREIAKRLEWWKQLRKKRANQK

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=438, Percent_Identity=42.0091324200913, Blast_Score=316, Evalue=2e-86,
Organism=Homo sapiens, GI18426904, Length=438, Percent_Identity=37.8995433789954, Blast_Score=263, Evalue=2e-70,
Organism=Escherichia coli, GI1787119, Length=422, Percent_Identity=47.6303317535545, Blast_Score=378, Evalue=1e-106,
Organism=Saccharomyces cerevisiae, GI6324111, Length=422, Percent_Identity=41.9431279620853, Blast_Score=306, Evalue=6e-84,
Organism=Saccharomyces cerevisiae, GI6324039, Length=217, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48968; Mature: 48968

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKDLFISSFDHRVYKKQPLAERMRPHSLNDVTGQSHLVGEKGLLSRIVAAGSIGSMIFW
CCCCCEEEHHHHHHHHCCCHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHCCCCCEEEE
GPPGTGKTTVARLLALETNFAFEQVSAIFTGVAELKKIFESAQARFMSGSQTVLFVDEIH
CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHH
RFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSRARVLTFLPHDNESLGMLLKR
HHCCCCCCCCCEEECCCCEEEEEECCCCCCCCHHHHHHHHHHEEEECCCCCCHHHHHHHH
AEALEEKTLPLDDNARDVLIDMSDGDARAALTLAEEVWSVARPGEIFDAAALRKIVQRRA
HHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
PIYDKGRDGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYIGRRLVRMAVEDVGL
CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
ADPQALVICNAAKDAYDYLGSPEGELALAQACLYVATAPKSNATYLAYKAAMRCARKNGS
CCCCEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHCCC
LPPPKHILNAPTKFMKEEGYGHGYCYDHDEPDAFSGQEYFPEKLGRQSYYQPVERGFERE
CCCHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHH
IAKRLEWWKQLRKKRANQK
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNKDLFISSFDHRVYKKQPLAERMRPHSLNDVTGQSHLVGEKGLLSRIVAAGSIGSMIFW
CCCCCEEEHHHHHHHHCCCHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHCCCCCEEEE
GPPGTGKTTVARLLALETNFAFEQVSAIFTGVAELKKIFESAQARFMSGSQTVLFVDEIH
CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHH
RFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSRARVLTFLPHDNESLGMLLKR
HHCCCCCCCCCEEECCCCEEEEEECCCCCCCCHHHHHHHHHHEEEECCCCCCHHHHHHHH
AEALEEKTLPLDDNARDVLIDMSDGDARAALTLAEEVWSVARPGEIFDAAALRKIVQRRA
HHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
PIYDKGRDGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYIGRRLVRMAVEDVGL
CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
ADPQALVICNAAKDAYDYLGSPEGELALAQACLYVATAPKSNATYLAYKAAMRCARKNGS
CCCCEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHCCC
LPPPKHILNAPTKFMKEEGYGHGYCYDHDEPDAFSGQEYFPEKLGRQSYYQPVERGFERE
CCCHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHH
IAKRLEWWKQLRKKRANQK
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]