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The map label for this gene is 49475643

Identifier: 49475643

GI number: 49475643

Start: 993995

End: 995671

Strand: Reverse

Name: 49475643

Synonym: BH08800

Alternate gene names: NA

Gene position: 995671-993995 (Counterclockwise)

Preceding gene: 49475644

Following gene: 49475642

Centisome position: 51.56

GC content: 39.48

Gene sequence:

>1677_bases
ATGGTTGCAGCCAACAAAGATGAGTTTGTTTTTTTACCTTTAGGAGGAGTAGGTGAAATAGGGATGAATCTTGCTGCTTA
TGGATTTGGTCCTCAAAATCTTCGTGAATGGCTTCTTGTTGATATGGGAGTTAGTTTTGCTGGTCCTGAATTACCAGGAG
CAGATCTTATCCTCCCTGATATTCGTTTTCTAGAAAATGAAAAACACAATGTGCGTGGTCTCGTTTTAACACACGCTCAT
GAAGATCATTATGGTGCTGTTCTTGATTTATGGCCAAAACTTAAAGTTCCACTTTACTGTACACCTTTTACAGCAGGATT
ATTGGAGAGTAAAAGGCAATCAGATTTTGACTCTCATCAAATTTCACTCAATATTTTTCAAGTTGGTGATTGCTTTCAGG
CTGGTCCCTTTGCAGTAGAGGCAATTGCCGTTAATCATTCAATTCCAGAATCTGTATCTTTGGCAATTACAACATCCTTA
GGCACTGTGATTCATACTGGCGATTGGAAAATTGATCATACACCTTCATTTGGGGCTGTAACGGATGAAAAACGCTTTCG
TGCTTTAGGCAAAAAAGGTATTCTAGCATTACTTTGTGATTCCACAAATGCTTGTCGGGATGGTATATCACCATCAGAGC
AGCAAGTTCAGACAAGTCTCTCTGAAATTATTGCGAAAGCTGAAGGGCGCGTTGCACTTGCAACTTTTGCGTCTAATGTT
GGTCGGATACGTTCAATTGCTCTTGCAGCTGAATCTGTTGGGCGCCAAGTTCTTGTCGTTGGGCGCTCTCTTAAGCGGAG
CATTATGATTGCGCAAGAGCTTGGTTATATGAATGGTTTGGCGCCATTTGTTTCGGAAGATGATTATGGTTACATTCCGC
GAAAAGAAATTGTTTTAATTGTAACAGGTAGTCAAGGTGAGTCTCGTGCTGCCTTAGCTAAACTTTCACGAAATGAAATG
AGAAACCTTCAACTTTCTGCTGGTGATACAGTTATTTATTCTTCACGAAGTATTCCAGGGAACGAAAAATCTATTATTGA
GATACAAAATCGTTTCATCGATATGGGAATTAAAATAATTACGAATGAAGATGCTCTTGTTCACGTTTCAGGTCATCCTC
GTCGTTTAGAGCTTTTAAAGATGTATGATTGGGTAAAACCACAGATACTTGTTCCTGTCCATGGTGAGGCAATGCATCTT
GCTGCTCAAGCAGATTTAGCACGTCAAGCAGGTATTAAAATGGTCGCCGATATTAGAAATGGTAATATGCTGCGTCTTGC
GCCAGAGCCTGTAAAGGTTATTGATCAAGTTCCTGTTGGTCGGCTTTATAAAGATGGTTGCCTTATTGGTGATGAAGATG
AGTTAGGGATTCGTGAGCGTCGCAAATTAAGTTATGCAGGTTATGTTGCTATTTCTCTCCAAATGAATAGCAAACATGAT
TTACAGGGCGATATTGGTTTGACAACATTTGGTTTACCTGAAAGTAATGAAAAGGGGGAAAGTTTAAAAGATATTCTCTT
AGATGTCGTAGAAAATACTATCTATAATATTCCACGCATTAAACGAAAAAATAATGAACTTATTCAGGAAGCAACGCGGC
GGGCAGTAAGAGCAGCCGTTAATGAGGCTTGGCAAAAAAAACCTGTCTGTACAGTTTTTTTACATCGGTCAAAATAA

Upstream 100 bases:

>100_bases
TGGAGATGTTCATTTTGGTTCGTCTGCTTCTGTAAATGCAGGTTGTTATTAATTGATAAAACTTTCTTTCATCATCAAAT
TGTTTTAAGAGGATATGTGT

Downstream 100 bases:

>100_bases
ATCAAATAAAAAATACAGAACATAAACTTTTTAACAAAAAAATTGTTATGTTTGCAAGTATTCAGAATGTAGCTATAGGC
GAGTGTAGAGTATATTTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 558; Mature: 558

Protein sequence:

>558_residues
MVAANKDEFVFLPLGGVGEIGMNLAAYGFGPQNLREWLLVDMGVSFAGPELPGADLILPDIRFLENEKHNVRGLVLTHAH
EDHYGAVLDLWPKLKVPLYCTPFTAGLLESKRQSDFDSHQISLNIFQVGDCFQAGPFAVEAIAVNHSIPESVSLAITTSL
GTVIHTGDWKIDHTPSFGAVTDEKRFRALGKKGILALLCDSTNACRDGISPSEQQVQTSLSEIIAKAEGRVALATFASNV
GRIRSIALAAESVGRQVLVVGRSLKRSIMIAQELGYMNGLAPFVSEDDYGYIPRKEIVLIVTGSQGESRAALAKLSRNEM
RNLQLSAGDTVIYSSRSIPGNEKSIIEIQNRFIDMGIKIITNEDALVHVSGHPRRLELLKMYDWVKPQILVPVHGEAMHL
AAQADLARQAGIKMVADIRNGNMLRLAPEPVKVIDQVPVGRLYKDGCLIGDEDELGIRERRKLSYAGYVAISLQMNSKHD
LQGDIGLTTFGLPESNEKGESLKDILLDVVENTIYNIPRIKRKNNELIQEATRRAVRAAVNEAWQKKPVCTVFLHRSK

Sequences:

>Translated_558_residues
MVAANKDEFVFLPLGGVGEIGMNLAAYGFGPQNLREWLLVDMGVSFAGPELPGADLILPDIRFLENEKHNVRGLVLTHAH
EDHYGAVLDLWPKLKVPLYCTPFTAGLLESKRQSDFDSHQISLNIFQVGDCFQAGPFAVEAIAVNHSIPESVSLAITTSL
GTVIHTGDWKIDHTPSFGAVTDEKRFRALGKKGILALLCDSTNACRDGISPSEQQVQTSLSEIIAKAEGRVALATFASNV
GRIRSIALAAESVGRQVLVVGRSLKRSIMIAQELGYMNGLAPFVSEDDYGYIPRKEIVLIVTGSQGESRAALAKLSRNEM
RNLQLSAGDTVIYSSRSIPGNEKSIIEIQNRFIDMGIKIITNEDALVHVSGHPRRLELLKMYDWVKPQILVPVHGEAMHL
AAQADLARQAGIKMVADIRNGNMLRLAPEPVKVIDQVPVGRLYKDGCLIGDEDELGIRERRKLSYAGYVAISLQMNSKHD
LQGDIGLTTFGLPESNEKGESLKDILLDVVENTIYNIPRIKRKNNELIQEATRRAVRAAVNEAWQKKPVCTVFLHRSK
>Mature_558_residues
MVAANKDEFVFLPLGGVGEIGMNLAAYGFGPQNLREWLLVDMGVSFAGPELPGADLILPDIRFLENEKHNVRGLVLTHAH
EDHYGAVLDLWPKLKVPLYCTPFTAGLLESKRQSDFDSHQISLNIFQVGDCFQAGPFAVEAIAVNHSIPESVSLAITTSL
GTVIHTGDWKIDHTPSFGAVTDEKRFRALGKKGILALLCDSTNACRDGISPSEQQVQTSLSEIIAKAEGRVALATFASNV
GRIRSIALAAESVGRQVLVVGRSLKRSIMIAQELGYMNGLAPFVSEDDYGYIPRKEIVLIVTGSQGESRAALAKLSRNEM
RNLQLSAGDTVIYSSRSIPGNEKSIIEIQNRFIDMGIKIITNEDALVHVSGHPRRLELLKMYDWVKPQILVPVHGEAMHL
AAQADLARQAGIKMVADIRNGNMLRLAPEPVKVIDQVPVGRLYKDGCLIGDEDELGIRERRKLSYAGYVAISLQMNSKHD
LQGDIGLTTFGLPESNEKGESLKDILLDVVENTIYNIPRIKRKNNELIQEATRRAVRAAVNEAWQKKPVCTVFLHRSK

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 61352; Mature: 61352

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAANKDEFVFLPLGGVGEIGMNLAAYGFGPQNLREWLLVDMGVSFAGPELPGADLILPD
CCCCCCCCEEEEECCCCCHHCCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCEECCC
IRFLENEKHNVRGLVLTHAHEDHYGAVLDLWPKLKVPLYCTPFTAGLLESKRQSDFDSHQ
HHHHCCCCCCEEEEEEEECCCCCCCCCEECCCCCCCCEEECCCHHHHHHHHHCCCCCCCE
ISLNIFQVGDCFQAGPFAVEAIAVNHSIPESVSLAITTSLGTVIHTGDWKIDHTPSFGAV
EEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEECCCEEECCCCCCCCC
TDEKRFRALGKKGILALLCDSTNACRDGISPSEQQVQTSLSEIIAKAEGRVALATFASNV
CCHHHHHHHCCCCEEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHCH
GRIRSIALAAESVGRQVLVVGRSLKRSIMIAQELGYMNGLAPFVSEDDYGYIPRKEIVLI
HHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCEEEE
VTGSQGESRAALAKLSRNEMRNLQLSAGDTVIYSSRSIPGNEKSIIEIQNRFIDMGIKII
EECCCCCHHHHHHHHHHHHHHCEEEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEE
TNEDALVHVSGHPRRLELLKMYDWVKPQILVPVHGEAMHLAAQADLARQAGIKMVADIRN
ECCCEEEEECCCCCHHHHHHHHCCCCCEEEEEECCCCEEEHHHHHHHHHCCCEEEEEECC
GNMLRLAPEPVKVIDQVPVGRLYKDGCLIGDEDELGIRERRKLSYAGYVAISLQMNSKHD
CCEEEECCCHHHHHHCCCCCCEECCCCEECCCCCCCHHHHHHCCEEEEEEEEEEECCCCC
LQGDIGLTTFGLPESNEKGESLKDILLDVVENTIYNIPRIKRKNNELIQEATRRAVRAAV
CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
NEAWQKKPVCTVFLHRSK
HHHHHCCCEEEEEEEECC
>Mature Secondary Structure
MVAANKDEFVFLPLGGVGEIGMNLAAYGFGPQNLREWLLVDMGVSFAGPELPGADLILPD
CCCCCCCCEEEEECCCCCHHCCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCEECCC
IRFLENEKHNVRGLVLTHAHEDHYGAVLDLWPKLKVPLYCTPFTAGLLESKRQSDFDSHQ
HHHHCCCCCCEEEEEEEECCCCCCCCCEECCCCCCCCEEECCCHHHHHHHHHCCCCCCCE
ISLNIFQVGDCFQAGPFAVEAIAVNHSIPESVSLAITTSLGTVIHTGDWKIDHTPSFGAV
EEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEECCCEEECCCCCCCCC
TDEKRFRALGKKGILALLCDSTNACRDGISPSEQQVQTSLSEIIAKAEGRVALATFASNV
CCHHHHHHHCCCCEEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHCH
GRIRSIALAAESVGRQVLVVGRSLKRSIMIAQELGYMNGLAPFVSEDDYGYIPRKEIVLI
HHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCEEEE
VTGSQGESRAALAKLSRNEMRNLQLSAGDTVIYSSRSIPGNEKSIIEIQNRFIDMGIKII
EECCCCCHHHHHHHHHHHHHHCEEEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEE
TNEDALVHVSGHPRRLELLKMYDWVKPQILVPVHGEAMHLAAQADLARQAGIKMVADIRN
ECCCEEEEECCCCCHHHHHHHHCCCCCEEEEEECCCCEEEHHHHHHHHHCCCEEEEEECC
GNMLRLAPEPVKVIDQVPVGRLYKDGCLIGDEDELGIRERRKLSYAGYVAISLQMNSKHD
CCEEEECCCHHHHHHCCCCCCEECCCCEECCCCCCCHHHHHHCCEEEEEEEEEEECCCCC
LQGDIGLTTFGLPESNEKGESLKDILLDVVENTIYNIPRIKRKNNELIQEATRRAVRAAV
CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
NEAWQKKPVCTVFLHRSK
HHHHHCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]