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The map label for this gene is sufD [H]

Identifier: 49475625

GI number: 49475625

Start: 965697

End: 966965

Strand: Reverse

Name: sufD [H]

Synonym: BH08620

Alternate gene names: 49475625

Gene position: 966965-965697 (Counterclockwise)

Preceding gene: 49475626

Following gene: 49475624

Centisome position: 50.07

GC content: 35.7

Gene sequence:

>1269_bases
ATGAATGTAAATTCGCAGCAAGAATTGTTAACGGTTGAAGAAGATATACTCAAGAATTTCAATCAGTATGTGAGCAATTT
ACCTGGTGATAAGACGGTGCAAGTAATCCGCAAAAGAGCTATTGAATTGTTTAAAACCACAAGACTTCCTTCACGTAAAA
TTGAAAGTTGGCACTATACTAATTTGCGCACATTATTAAAATCTGTGAGTCATTTTTCACCAGAAAATAATGGACAATTG
GTTGGCGGATTACTTTCAGAAAGTCAGGTATTTTCCATTGAAAACGGCAAAACACTTACACACCCAGAAATATCAGATGT
TACAATAAAACGTCTTGCAGAGGAACTGGAAAAAGAAAGTGCAAAAATAGACTTCGTCACTTCTGATGAAGATTTTATTG
GACAATTAAATATAGCTTTTGTTACGGATGGTTGGCTTTTTCATATTCCTGAAAATACAAAATTAAATGTTCCTATTGAG
TTGCAAAATATTCAAATGGGTGGGCAATCTCATACTTTTTCAGATATAAAAATGGATAAAAACAGTCAAGCTGTGTTTGT
TGAACATCAGACTGGCGATGATAAAGAGACCTTCATCAGTTCGATATTTTCATTAAATGTTGCAGCTTATGGTGAGGTTA
CATGGATTCTTATTCGCAATCGCGGTTTTAATTCTACACAGTTTGGTAAATTTCGCGCTGTCCTTGGACAAGGCGCTAAA
TTATCGCTTTATGTGATTAATATAGGCAGTCAACTTAATCGTCAGGAAATTGATGTTGAATTACAGGGGGAAGAGTCTGA
TTTTCAATTACGGGTTATAAATTTGCTCTCTGGACAAACACACAGCGATCTTACGATGACTGTTCGTCACATTGAAGAAA
AATCAACCTCGACAGAAATTGTACGTAATGTAGTTACGGATAAGGCGGTTGGTGTATTTCAAGGGATAATACGTGTTGCT
CAAAAAGCTCAAAAAACAGATGCTCGCATGGCTTGTAATAGTCTCATTCTTTCAGATGATGCAGAATTTAATGCAAAACC
TGAACTGGAAATTTTCGCTGATGATGTTGTATGTGGCCATGGTGCGACGGTTGCTAATATTAATTGTGATCATCTTTTTT
ATCTCATGGCGCGCGGTATTCCTTTTAAAACTGCTCGTGCCCTTTTAATTAAAGGATTCGTTTCCGAACTCATTGATGAT
ATCAAACAAGAGAATATCCAGACTATTTTGGAAAATATCACTGGCAAATGGTTAGAAAAAAATGTTTAA

Upstream 100 bases:

>100_bases
AAGGACGTATTATTAAAAGCGGAGATAAATCATTAGCGCTTTATCTAGAACAGAACGGATATGCTGATCTTATCAGAGAA
GCAGCTTGAGGTCATCAAAT

Downstream 100 bases:

>100_bases
GGTAGAGAAGAAATGGAAAATAACGTACAAACATTAAGTTATAATGTAGAAGAAATTCGACGTGATTTTCCCCTTTTGCA
CCGTGATGTTTATGGAAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MNVNSQQELLTVEEDILKNFNQYVSNLPGDKTVQVIRKRAIELFKTTRLPSRKIESWHYTNLRTLLKSVSHFSPENNGQL
VGGLLSESQVFSIENGKTLTHPEISDVTIKRLAEELEKESAKIDFVTSDEDFIGQLNIAFVTDGWLFHIPENTKLNVPIE
LQNIQMGGQSHTFSDIKMDKNSQAVFVEHQTGDDKETFISSIFSLNVAAYGEVTWILIRNRGFNSTQFGKFRAVLGQGAK
LSLYVINIGSQLNRQEIDVELQGEESDFQLRVINLLSGQTHSDLTMTVRHIEEKSTSTEIVRNVVTDKAVGVFQGIIRVA
QKAQKTDARMACNSLILSDDAEFNAKPELEIFADDVVCGHGATVANINCDHLFYLMARGIPFKTARALLIKGFVSELIDD
IKQENIQTILENITGKWLEKNV

Sequences:

>Translated_422_residues
MNVNSQQELLTVEEDILKNFNQYVSNLPGDKTVQVIRKRAIELFKTTRLPSRKIESWHYTNLRTLLKSVSHFSPENNGQL
VGGLLSESQVFSIENGKTLTHPEISDVTIKRLAEELEKESAKIDFVTSDEDFIGQLNIAFVTDGWLFHIPENTKLNVPIE
LQNIQMGGQSHTFSDIKMDKNSQAVFVEHQTGDDKETFISSIFSLNVAAYGEVTWILIRNRGFNSTQFGKFRAVLGQGAK
LSLYVINIGSQLNRQEIDVELQGEESDFQLRVINLLSGQTHSDLTMTVRHIEEKSTSTEIVRNVVTDKAVGVFQGIIRVA
QKAQKTDARMACNSLILSDDAEFNAKPELEIFADDVVCGHGATVANINCDHLFYLMARGIPFKTARALLIKGFVSELIDD
IKQENIQTILENITGKWLEKNV
>Mature_422_residues
MNVNSQQELLTVEEDILKNFNQYVSNLPGDKTVQVIRKRAIELFKTTRLPSRKIESWHYTNLRTLLKSVSHFSPENNGQL
VGGLLSESQVFSIENGKTLTHPEISDVTIKRLAEELEKESAKIDFVTSDEDFIGQLNIAFVTDGWLFHIPENTKLNVPIE
LQNIQMGGQSHTFSDIKMDKNSQAVFVEHQTGDDKETFISSIFSLNVAAYGEVTWILIRNRGFNSTQFGKFRAVLGQGAK
LSLYVINIGSQLNRQEIDVELQGEESDFQLRVINLLSGQTHSDLTMTVRHIEEKSTSTEIVRNVVTDKAVGVFQGIIRVA
QKAQKTDARMACNSLILSDDAEFNAKPELEIFADDVVCGHGATVANINCDHLFYLMARGIPFKTARALLIKGFVSELIDD
IKQENIQTILENITGKWLEKNV

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=381, Percent_Identity=28.0839895013123, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI87081955, Length=293, Percent_Identity=21.8430034129693, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 47433; Mature: 47433

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVNSQQELLTVEEDILKNFNQYVSNLPGDKTVQVIRKRAIELFKTTRLPSRKIESWHYT
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHH
NLRTLLKSVSHFSPENNGQLVGGLLSESQVFSIENGKTLTHPEISDVTIKRLAEELEKES
HHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCEECCCCCHHHHHHHHHHHHHHCC
AKIDFVTSDEDFIGQLNIAFVTDGWLFHIPENTKLNVPIELQNIQMGGQSHTFSDIKMDK
CEEEEEECCCHHHEEEEEEEEECCEEEECCCCCEEECEEEEEEEEECCCCCCCCCEEECC
NSQAVFVEHQTGDDKETFISSIFSLNVAAYGEVTWILIRNRGFNSTQFGKFRAVLGQGAK
CCCEEEEEECCCCCHHHHHHHHHHHCEEEECCEEEEEEECCCCCCCCHHHHHHHHCCCCE
LSLYVINIGSQLNRQEIDVELQGEESDFQLRVINLLSGQTHSDLTMTVRHIEEKSTSTEI
EEEEEEECCCCCCCHHEEEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCHHHHH
VRNVVTDKAVGVFQGIIRVAQKAQKTDARMACNSLILSDDAEFNAKPELEIFADDVVCGH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEEEECCEEECC
GATVANINCDHLFYLMARGIPFKTARALLIKGFVSELIDDIKQENIQTILENITGKWLEK
CCEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHC
NV
CC
>Mature Secondary Structure
MNVNSQQELLTVEEDILKNFNQYVSNLPGDKTVQVIRKRAIELFKTTRLPSRKIESWHYT
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHH
NLRTLLKSVSHFSPENNGQLVGGLLSESQVFSIENGKTLTHPEISDVTIKRLAEELEKES
HHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCEECCCCCHHHHHHHHHHHHHHCC
AKIDFVTSDEDFIGQLNIAFVTDGWLFHIPENTKLNVPIELQNIQMGGQSHTFSDIKMDK
CEEEEEECCCHHHEEEEEEEEECCEEEECCCCCEEECEEEEEEEEECCCCCCCCCEEECC
NSQAVFVEHQTGDDKETFISSIFSLNVAAYGEVTWILIRNRGFNSTQFGKFRAVLGQGAK
CCCEEEEEECCCCCHHHHHHHHHHHCEEEECCEEEEEEECCCCCCCCHHHHHHHHCCCCE
LSLYVINIGSQLNRQEIDVELQGEESDFQLRVINLLSGQTHSDLTMTVRHIEEKSTSTEI
EEEEEEECCCCCCCHHEEEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCHHHHH
VRNVVTDKAVGVFQGIIRVAQKAQKTDARMACNSLILSDDAEFNAKPELEIFADDVVCGH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEEEECCEEECC
GATVANINCDHLFYLMARGIPFKTARALLIKGFVSELIDDIKQENIQTILENITGKWLEK
CCEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHC
NV
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]