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The map label for this gene is yqgF [C]

Identifier: 49475587

GI number: 49475587

Start: 928617

End: 929096

Strand: Reverse

Name: yqgF [C]

Synonym: BH08220

Alternate gene names: 49475587

Gene position: 929096-928617 (Counterclockwise)

Preceding gene: 49475590

Following gene: 49475585

Centisome position: 48.11

GC content: 39.58

Gene sequence:

>480_bases
ATGGCCATTATTAACATAAATGAAGTTATGATACATCTTTTGCCCGGGCAAATAATAGCAGGGTTGGATTTGGGTACGAA
AACTATCGGAATTGCGGTTTCTGATAGAGGGCTAATTTTTTCAAATCCGCGTTCTGTACTCCAACGACAAAAATTTACGG
TAGATGCTCAAACACTTATAAAAATTTTTGACCATGAAAATGTGGGCGTTATTATTATTGGGTTACCTCTTAACATGAAT
GGAAGCAGTGGCCCTCGTGCTCAAGCAACTAGAACTTTTGTCAGAAATATGGAAGCATATACAGAAATTCCATTTGTTTT
TTGGGACGAACGCTTATCGACGATTGCTGCAGAACGCTCTCTTCTCGAAATGGATGTATCACGCGCTAAAAGAGCAACTC
GGATTGATTCTGCTGCCGCCGCATTCATATTACAAGGTGCTCTCAATAGAATCCACAACCTTCATCATATAGAAGGATAA

Upstream 100 bases:

>100_bases
GCTATACAAGTCTGCGTTTGCAAGCGCAAGAATATTGATAATCCAAATAAAGAATATAAGTATAAATCTAAAACAATAAA
GAACTTAAATTATAAAGCAT

Downstream 100 bases:

>100_bases
AGAACATTTAACAAAAGTCCTGCATTATATCGTGCAATCAGCATACCATAGGAAGATCTCCATTGTCCCCCAAGACGGCT
TTCCATATAAGCACTTGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MAIININEVMIHLLPGQIIAGLDLGTKTIGIAVSDRGLIFSNPRSVLQRQKFTVDAQTLIKIFDHENVGVIIIGLPLNMN
GSSGPRAQATRTFVRNMEAYTEIPFVFWDERLSTIAAERSLLEMDVSRAKRATRIDSAAAAFILQGALNRIHNLHHIEG

Sequences:

>Translated_159_residues
MAIININEVMIHLLPGQIIAGLDLGTKTIGIAVSDRGLIFSNPRSVLQRQKFTVDAQTLIKIFDHENVGVIIIGLPLNMN
GSSGPRAQATRTFVRNMEAYTEIPFVFWDERLSTIAAERSLLEMDVSRAKRATRIDSAAAAFILQGALNRIHNLHHIEG
>Mature_158_residues
AIININEVMIHLLPGQIIAGLDLGTKTIGIAVSDRGLIFSNPRSVLQRQKFTVDAQTLIKIFDHENVGVIIIGLPLNMNG
SSGPRAQATRTFVRNMEAYTEIPFVFWDERLSTIAAERSLLEMDVSRAKRATRIDSAAAAFILQGALNRIHNLHHIEG

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=132, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_BARHE (Q6G3F1)

Other databases:

- EMBL:   BX897699
- RefSeq:   YP_033628.1
- ProteinModelPortal:   Q6G3F1
- SMR:   Q6G3F1
- GeneID:   2865843
- GenomeReviews:   BX897699_GR
- KEGG:   bhe:BH08220
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- PhylomeDB:   Q6G3F1
- ProtClustDB:   CLSK927124
- BioCyc:   BHEN283166:BH08220-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 17558; Mature: 17426

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIININEVMIHLLPGQIIAGLDLGTKTIGIAVSDRGLIFSNPRSVLQRQKFTVDAQTLI
CEEEEHHHHHHEECCCCEEECCCCCCEEEEEEECCCCEEEECHHHHHHHHHCCCCHHHHH
KIFDHENVGVIIIGLPLNMNGSSGPRAQATRTFVRNMEAYTEIPFVFWDERLSTIAAERS
HHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHH
LLEMDVSRAKRATRIDSAAAAFILQGALNRIHNLHHIEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AIININEVMIHLLPGQIIAGLDLGTKTIGIAVSDRGLIFSNPRSVLQRQKFTVDAQTLI
EEEEHHHHHHEECCCCEEECCCCCCEEEEEEECCCCEEEECHHHHHHHHHCCCCHHHHH
KIFDHENVGVIIIGLPLNMNGSSGPRAQATRTFVRNMEAYTEIPFVFWDERLSTIAAERS
HHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHH
LLEMDVSRAKRATRIDSAAAAFILQGALNRIHNLHHIEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA