Click here to switch to the map view.

The map label for this gene is ycfF [C]

Identifier: 49475407

GI number: 49475407

Start: 727056

End: 727478

Strand: Reverse

Name: ycfF [C]

Synonym: BH06190

Alternate gene names: 49475407

Gene position: 727478-727056 (Counterclockwise)

Preceding gene: 49475408

Following gene: 49475404

Centisome position: 37.67

GC content: 35.93

Gene sequence:

>423_bases
ATGAAACAAGCTTATGATAATAATAATATTTTTGCGAAATTAATTCGCAATGAAATCCCTTCCGTCCGTGTCTATGAAGA
TGATGATGTTATTGCATTCATGGATATTATGCCACAAGCACCAGGCCATACACTGGTTATTCCAAAAAAAGGCTCTAGAA
ACCTCCTAGACGCAGATACTGAAACATTATTTCCAGTTATCAAAGCTGTTCAAAAAATCGCCAAAGCCGTCAAAAAAGCC
TTTCAAGCAGATGGTATAACAGTTATGCAATTTAATGAAGCTGCTAGTCAACAAACCGTTTATCATCTCCATTTCCATAT
TATACCACGTATGGAAGGAATAGAGCTTACCCCCCATAATAATATTATAACGCCTACAGAAATACTTGAAGAGAACGCAA
AAAAAATTCGAGCTGCTCTTTAA

Upstream 100 bases:

>100_bases
AAAAATTGAATGCCCCCTCTTTGTCAACCCTACCAACTTTCGCACTCTTTCATTTTGAATTAAAAATTTAAACTCAAAAC
GAATAAAAGGAAATATTTGT

Downstream 100 bases:

>100_bases
AGAAATTTTAAGTTGCTGAGCTTTTTCTTCCCACACGTTTTTTGCTAAAACGTGCTGTTTTTCTGTTCTTTAAACCAACA
GATCCATCGGAAGATGAAAT

Product: cell-cycle regulation Hit-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MKQAYDNNNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDADTETLFPVIKAVQKIAKAVKKA
FQADGITVMQFNEAASQQTVYHLHFHIIPRMEGIELTPHNNIITPTEILEENAKKIRAAL

Sequences:

>Translated_140_residues
MKQAYDNNNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDADTETLFPVIKAVQKIAKAVKKA
FQADGITVMQFNEAASQQTVYHLHFHIIPRMEGIELTPHNNIITPTEILEENAKKIRAAL
>Mature_140_residues
MKQAYDNNNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDADTETLFPVIKAVQKIAKAVKKA
FQADGITVMQFNEAASQQTVYHLHFHIIPRMEGIELTPHNNIITPTEILEENAKKIRAAL

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI4885413, Length=108, Percent_Identity=38.8888888888889, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI1787346, Length=103, Percent_Identity=39.8058252427184, Blast_Score=62, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17506713, Length=105, Percent_Identity=38.0952380952381, Blast_Score=77, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6320078, Length=105, Percent_Identity=40, Blast_Score=75, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28574010, Length=108, Percent_Identity=39.8148148148148, Blast_Score=77, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24581222, Length=108, Percent_Identity=39.8148148148148, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 15793; Mature: 15793

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQAYDNNNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDADT
CCCCCCCCCHHHHHHHHCCCCEEEECCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCH
ETLFPVIKAVQKIAKAVKKAFQADGITVMQFNEAASQQTVYHLHFHIIPRMEGIELTPHN
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEEEECCCCCEEECCCC
NIITPTEILEENAKKIRAAL
CCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKQAYDNNNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDADT
CCCCCCCCCHHHHHHHHCCCCEEEECCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCH
ETLFPVIKAVQKIAKAVKKAFQADGITVMQFNEAASQQTVYHLHFHIIPRMEGIELTPHN
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEEEECCCCCEEECCCC
NIITPTEILEENAKKIRAAL
CCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8978084; 9403685 [H]