Click here to switch to the map view.

The map label for this gene is ycgF [H]

Identifier: 49185911

GI number: 49185911

Start: 2874059

End: 2874685

Strand: Direct

Name: ycgF [H]

Synonym: BAS2905

Alternate gene names: 49185911

Gene position: 2874059-2874685 (Clockwise)

Preceding gene: 49185910

Following gene: 49185915

Centisome position: 54.97

GC content: 30.78

Gene sequence:

>627_bases
GTGGGCATATTTTTAAGCTATGTTTTCTTAGGTTTATCATTATCTGCTCCAATGGGACCTATAAATGCTGCGCAGCTAGA
AAAAGGTATTAGGAGTGGGGTTTTTCACGCTTGGATTCTTGGCATAGGAGCCTTACTTGCAGATGTTATCTACATGGCAC
TTATTTATTTAGGTGTAATTCATTTCCTCGAAAAAGATATTATAAAACTTTTCTTATGGTCTTTCGGCGCTTTTGTTTTA
ATCTATACAGGCATCGAAAGTTTAAAAAATGCGAATCAAATTAGCATTAGTAATACTAGAAATGATGATTCAATTATTAA
AAGCTTTTTTTCTGGTTTTTTTATGTCTTTATCGAATCCATTAACAATTCTATTTTGGCTTGGAATTTTCGGATCTATAT
TAGCAAAAGCCGCTTCTTCCTATAGTAAAGAGCAGCTTTTGTTATATAGCTTTGGTACTATTTTAGGGATTTTCATTTGG
GATATTATGATGGCAAGTACTTCTAGTATATTTCGTAAAATTTTAAATACGCGTATATTGTCTCTTATAACAGTAATATC
TGGAATATCACTTATTATTTATGGATTATATTTTGGTTTTCAAACTTACCAAATCATTTTTCAATAG

Upstream 100 bases:

>100_bases
AATAAGTAATTCACTCCGTTTTTTATTATTTAGTTGTACAAACTTTAACCACTGAATAGATTTAATATAGATCAAATTTA
GTGGGAGGAGCATATTATAC

Downstream 100 bases:

>100_bases
CTTCTATTATTTAGTTTTCACATACTATTCATGTTGTGTAAAGATAGATTCTTCATATAGCTTTATTCCTTTTTCTTGAG
ACAAAATGAACAATTATAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MGIFLSYVFLGLSLSAPMGPINAAQLEKGIRSGVFHAWILGIGALLADVIYMALIYLGVIHFLEKDIIKLFLWSFGAFVL
IYTGIESLKNANQISISNTRNDDSIIKSFFSGFFMSLSNPLTILFWLGIFGSILAKAASSYSKEQLLLYSFGTILGIFIW
DIMMASTSSIFRKILNTRILSLITVISGISLIIYGLYFGFQTYQIIFQ

Sequences:

>Translated_208_residues
MGIFLSYVFLGLSLSAPMGPINAAQLEKGIRSGVFHAWILGIGALLADVIYMALIYLGVIHFLEKDIIKLFLWSFGAFVL
IYTGIESLKNANQISISNTRNDDSIIKSFFSGFFMSLSNPLTILFWLGIFGSILAKAASSYSKEQLLLYSFGTILGIFIW
DIMMASTSSIFRKILNTRILSLITVISGISLIIYGLYFGFQTYQIIFQ
>Mature_207_residues
GIFLSYVFLGLSLSAPMGPINAAQLEKGIRSGVFHAWILGIGALLADVIYMALIYLGVIHFLEKDIIKLFLWSFGAFVLI
YTGIESLKNANQISISNTRNDDSIIKSFFSGFFMSLSNPLTILFWLGIFGSILAKAASSYSKEQLLLYSFGTILGIFIWD
IMMASTSSIFRKILNTRILSLITVISGISLIIYGLYFGFQTYQIIFQ

Specific function: Unknown

COG id: COG1280

COG function: function code E; Putative threonine efflux protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rht family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001123 [H]

Pfam domain/function: PF01810 LysE [H]

EC number: NA

Molecular weight: Translated: 23151; Mature: 23020

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIFLSYVFLGLSLSAPMGPINAAQLEKGIRSGVFHAWILGIGALLADVIYMALIYLGVI
CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HFLEKDIIKLFLWSFGAFVLIYTGIESLKNANQISISNTRNDDSIIKSFFSGFFMSLSNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCH
LTILFWLGIFGSILAKAASSYSKEQLLLYSFGTILGIFIWDIMMASTSSIFRKILNTRIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLITVISGISLIIYGLYFGFQTYQIIFQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GIFLSYVFLGLSLSAPMGPINAAQLEKGIRSGVFHAWILGIGALLADVIYMALIYLGVI
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HFLEKDIIKLFLWSFGAFVLIYTGIESLKNANQISISNTRNDDSIIKSFFSGFFMSLSNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCH
LTILFWLGIFGSILAKAASSYSKEQLLLYSFGTILGIFIWDIMMASTSSIFRKILNTRIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLITVISGISLIIYGLYFGFQTYQIIFQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]