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The map label for this gene is ydfL [H]

Identifier: 49184538

GI number: 49184538

Start: 1554733

End: 1555563

Strand: Direct

Name: ydfL [H]

Synonym: BAS1523

Alternate gene names: 49184538

Gene position: 1554733-1555563 (Clockwise)

Preceding gene: 49184537

Following gene: 49184539

Centisome position: 29.73

GC content: 32.37

Gene sequence:

>831_bases
ATGTTATTAAATAAACGTTTTACAATTGGAGAAATGGCAAAAATGCATAATATAGCGGAATCTACTTTACGTTATTATGA
TGAAAAAGGAATATTTCATCCGTCCATTGTGGACCCACAAACAAATTATCGCTATTACACAATCGATCAATTTTCACTAT
TAGATACGATTAAGTTTTTACGCCAATTAAATATTCCATTAAAGGAAATTAAGAAATATATTGATGAAAGAAATCCGGCA
TACGCACTGAATTTACTGGAAAAACAACAAGAAATGATGTTGAAAAAACAAAGAGAAATTGAGTATGCTTTGGCGAAAAT
GGAGCATAGAATTCATTTGATTAAGGAAGCAACAAAAGCAAAAGCTGAACAAATGGTAATGAAAGAGATCCCGCGAAGAA
AAATTACAGCAATTGCGGTTGCTCCAAATACAACGGACGATATGTTTGAGTACTACATTCATTCGTTGCAAAAAAATATG
AGGCAAATGGATGATAGCTTATTTTCTGGAGATATCGGTGTAACTGTTGCGAAAAAAGGATTCATGCAAAATGAGTTTCA
AGCATATAGCAGTGTGTTTATTCTTTTGGATTACATGCCTTTTCGAGTACATCGTTCAGATGAAATTAAAGAAGGTATGT
TTGCCTGTGTATATCATCATGGGCCATATGAAGAAACTGATGAAACATATAAGAAGTTAATGAAATACATTGATCAAGAA
GGATATAAAATAGACGGAGATGCAATTGAGATTGCATTAATTGATTGGTCTGTAACAGAAAATCCAGATGAGCAAGTAAC
CGAAATTCAAATTCCTGTAGTGAAAAAATAA

Upstream 100 bases:

>100_bases
TAATAATGAATAAAAAGAATTCTCGTATGGGAATTCTTTTTTTGTTTTGAAGATAAAATGAACATATAATGAAGTAAATA
GGAATGGAAGGGAATAAAAG

Downstream 100 bases:

>100_bases
GGTGAAAACCTTTGAACTGATGACAAATTTACATTCATTAATATAATTCAGTTACCTATTTTTTAATTCTCTCTTGACCT
TCAAGTTACTTGAAGGTTTA

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MLLNKRFTIGEMAKMHNIAESTLRYYDEKGIFHPSIVDPQTNYRYYTIDQFSLLDTIKFLRQLNIPLKEIKKYIDERNPA
YALNLLEKQQEMMLKKQREIEYALAKMEHRIHLIKEATKAKAEQMVMKEIPRRKITAIAVAPNTTDDMFEYYIHSLQKNM
RQMDDSLFSGDIGVTVAKKGFMQNEFQAYSSVFILLDYMPFRVHRSDEIKEGMFACVYHHGPYEETDETYKKLMKYIDQE
GYKIDGDAIEIALIDWSVTENPDEQVTEIQIPVVKK

Sequences:

>Translated_276_residues
MLLNKRFTIGEMAKMHNIAESTLRYYDEKGIFHPSIVDPQTNYRYYTIDQFSLLDTIKFLRQLNIPLKEIKKYIDERNPA
YALNLLEKQQEMMLKKQREIEYALAKMEHRIHLIKEATKAKAEQMVMKEIPRRKITAIAVAPNTTDDMFEYYIHSLQKNM
RQMDDSLFSGDIGVTVAKKGFMQNEFQAYSSVFILLDYMPFRVHRSDEIKEGMFACVYHHGPYEETDETYKKLMKYIDQE
GYKIDGDAIEIALIDWSVTENPDEQVTEIQIPVVKK
>Mature_276_residues
MLLNKRFTIGEMAKMHNIAESTLRYYDEKGIFHPSIVDPQTNYRYYTIDQFSLLDTIKFLRQLNIPLKEIKKYIDERNPA
YALNLLEKQQEMMLKKQREIEYALAKMEHRIHLIKEATKAKAEQMVMKEIPRRKITAIAVAPNTTDDMFEYYIHSLQKNM
RQMDDSLFSGDIGVTVAKKGFMQNEFQAYSSVFILLDYMPFRVHRSDEIKEGMFACVYHHGPYEETDETYKKLMKYIDQE
GYKIDGDAIEIALIDWSVTENPDEQVTEIQIPVVKK

Specific function: Unknown

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 32581; Mature: 32581

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLNKRFTIGEMAKMHNIAESTLRYYDEKGIFHPSIVDPQTNYRYYTIDQFSLLDTIKFL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHH
RQLNIPLKEIKKYIDERNPAYALNLLEKQQEMMLKKQREIEYALAKMEHRIHLIKEATKA
HHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAEQMVMKEIPRRKITAIAVAPNTTDDMFEYYIHSLQKNMRQMDDSLFSGDIGVTVAKKG
HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHC
FMQNEFQAYSSVFILLDYMPFRVHRSDEIKEGMFACVYHHGPYEETDETYKKLMKYIDQE
CHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHCCC
GYKIDGDAIEIALIDWSVTENPDEQVTEIQIPVVKK
CCEECCCEEEEEEEEEECCCCCCCHHEEEECCCCCC
>Mature Secondary Structure
MLLNKRFTIGEMAKMHNIAESTLRYYDEKGIFHPSIVDPQTNYRYYTIDQFSLLDTIKFL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHH
RQLNIPLKEIKKYIDERNPAYALNLLEKQQEMMLKKQREIEYALAKMEHRIHLIKEATKA
HHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAEQMVMKEIPRRKITAIAVAPNTTDDMFEYYIHSLQKNMRQMDDSLFSGDIGVTVAKKG
HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHC
FMQNEFQAYSSVFILLDYMPFRVHRSDEIKEGMFACVYHHGPYEETDETYKKLMKYIDQE
CHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHCCC
GYKIDGDAIEIALIDWSVTENPDEQVTEIQIPVVKK
CCEECCCEEEEEEEEEECCCCCCCHHEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]