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The map label for this gene is ntdR [H]

Identifier: 49184036

GI number: 49184036

Start: 1068661

End: 1068918

Strand: Direct

Name: ntdR [H]

Synonym: BAS1015

Alternate gene names: 49184036

Gene position: 1068661-1068918 (Clockwise)

Preceding gene: 49184035

Following gene: 49184037

Centisome position: 20.44

GC content: 39.53

Gene sequence:

>258_bases
TTGGCAGGAGGCGATGAGGTAGCAGCTGGAATTATTTCAGAGGCGAAACGCCATAATTGGAGCATTCCAGATGATCTCGC
TGTTATCGGTTTTGATAATCAAATTTTATCACAGATTACAGAACCAGGTATTACGACAATTGAACAGCCAATCGATGAGA
TGGCCCGAAAAGTTGTCGACCTAATGATGGATAAAATCCATACGAAAAATTATCGAAAAAAAGAATTGTATGAGTTTGAA
CTGGAGCTCTTGGTGTAA

Upstream 100 bases:

>100_bases
AAGTAGAAGCGATCGATTTTCTTGAAAACGCTTTCTCTTGGGAAGATGGCAAACGAATATTCCATGAAGTATTGAAAGAC
AAAAAAATCCTACCGCGATT

Downstream 100 bases:

>100_bases
GGTTCAACGATGAAGGATACGATGTTATTAGCCTAGTAGACTATGTCTGCTAGGTTTTTTTCTGTTCACAAACTACTATT
CTTCGTGAACGCAGTCATCA

Product: transcriptional regulator, C-terminus

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 84

Protein sequence:

>85_residues
MAGGDEVAAGIISEAKRHNWSIPDDLAVIGFDNQILSQITEPGITTIEQPIDEMARKVVDLMMDKIHTKNYRKKELYEFE
LELLV

Sequences:

>Translated_85_residues
MAGGDEVAAGIISEAKRHNWSIPDDLAVIGFDNQILSQITEPGITTIEQPIDEMARKVVDLMMDKIHTKNYRKKELYEFE
LELLV
>Mature_84_residues
AGGDEVAAGIISEAKRHNWSIPDDLAVIGFDNQILSQITEPGITTIEQPIDEMARKVVDLMMDKIHTKNYRKKELYEFEL
ELLV

Specific function: Positively regulates the ntdABC operon and negatively regulates its own transcription. Binds to NTD to induce ntdABC transcription [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=66, Percent_Identity=40.9090909090909, Blast_Score=61, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 9644; Mature: 9513

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGGDEVAAGIISEAKRHNWSIPDDLAVIGFDNQILSQITEPGITTIEQPIDEMARKVVD
CCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LMMDKIHTKNYRKKELYEFELELLV
HHHHHHHCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
AGGDEVAAGIISEAKRHNWSIPDDLAVIGFDNQILSQITEPGITTIEQPIDEMARKVVD
CCCHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LMMDKIHTKNYRKKELYEFELELLV
HHHHHHHCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]