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The map label for this gene is algU [H]

Identifier: 49183986

GI number: 49183986

Start: 1020096

End: 1020716

Strand: Direct

Name: algU [H]

Synonym: BAS0964

Alternate gene names: 49183986

Gene position: 1020096-1020716 (Clockwise)

Preceding gene: 49183985

Following gene: 49183987

Centisome position: 19.51

GC content: 32.85

Gene sequence:

>621_bases
ATGTTATTATCAATTACATTTTTTTATTTATTTTATAAAACTTTTCCATACAGTGCGTCGTCTAATATATGGAAAGGAGG
AAATGATGTGGATGAATTAACGGTAGAAGCGTTTGAAATAGAAGATAAGGAGGACCTTATCGACGAAATCATGAACAAGT
ATGGACAAGAAGTCTTACAGCTTGTGTATTCATATGTGAATAATAAAGAGGTCGCGGAGGATGTAACGCAAGATATATTT
GTGAAATGCTATAAATCTCTTCATACATATAAAGGGAATTCGAACTTAAAAACATGGTTATGGAGAATTGCGATTAATCA
TTGTAAGGACTATTTAAAAAGTTGGTATAACAAAAAGGTCATCGTGACAGAGGATGACTTTACGTATATGGAGAGTCAAA
AAGAAAGTGTGGAACAAATAGTTATTCAAAATGCAGAGGATAGTAGGCTTGCTTCTGCAGTAATGAGTTTACCGATCAAA
TATCGAGAAGTCATTTATCTATTTTATTATGAAGAGTTATCAATTAAAGAGATTGCTACGGTAATAGAAGTGAAGGAAAA
CACGATAAAAACGAGGCTGAAAAAAGCAAAGGAGCTTTTGAAGAAAGGATTGGAGGAATAG

Upstream 100 bases:

>100_bases
TGAAAGAGCGCCTTGGGAGAAAGACGCTCTTTAGGTGAATGTAGTGTAATAACTATTCGGTTTATTATATGTAATTTGCT
GAGGAAGTGTTTTATAAAAA

Downstream 100 bases:

>100_bases
TCAAATGGAAGATCGATTAAAAGGCTTGCGAAAATCAATGGAGAACACAACTTTTAAACATTTGAGTTTTTCTGATCAGC
ACCAGAAGCGGGTGCGTGAA

Product: RNA polymerase factor sigma C

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MLLSITFFYLFYKTFPYSASSNIWKGGNDVDELTVEAFEIEDKEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIF
VKCYKSLHTYKGNSNLKTWLWRIAINHCKDYLKSWYNKKVIVTEDDFTYMESQKESVEQIVIQNAEDSRLASAVMSLPIK
YREVIYLFYYEELSIKEIATVIEVKENTIKTRLKKAKELLKKGLEE

Sequences:

>Translated_206_residues
MLLSITFFYLFYKTFPYSASSNIWKGGNDVDELTVEAFEIEDKEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIF
VKCYKSLHTYKGNSNLKTWLWRIAINHCKDYLKSWYNKKVIVTEDDFTYMESQKESVEQIVIQNAEDSRLASAVMSLPIK
YREVIYLFYYEELSIKEIATVIEVKENTIKTRLKKAKELLKKGLEE
>Mature_206_residues
MLLSITFFYLFYKTFPYSASSNIWKGGNDVDELTVEAFEIEDKEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIF
VKCYKSLHTYKGNSNLKTWLWRIAINHCKDYLKSWYNKKVIVTEDDFTYMESQKESVEQIVIQNAEDSRLASAVMSLPIK
YREVIYLFYYEELSIKEIATVIEVKENTIKTRLKKAKELLKKGLEE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=178, Percent_Identity=28.6516853932584, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 24336; Mature: 24336

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLSITFFYLFYKTFPYSASSNIWKGGNDVDELTVEAFEIEDKEDLIDEIMNKYGQEVLQ
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LVYSYVNNKEVAEDVTQDIFVKCYKSLHTYKGNSNLKTWLWRIAINHCKDYLKSWYNKKV
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCE
IVTEDDFTYMESQKESVEQIVIQNAEDSRLASAVMSLPIKYREVIYLFYYEELSIKEIAT
EEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHEEHHHCCHHHHHHHHH
VIEVKENTIKTRLKKAKELLKKGLEE
HHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLLSITFFYLFYKTFPYSASSNIWKGGNDVDELTVEAFEIEDKEDLIDEIMNKYGQEVLQ
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LVYSYVNNKEVAEDVTQDIFVKCYKSLHTYKGNSNLKTWLWRIAINHCKDYLKSWYNKKV
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCE
IVTEDDFTYMESQKESVEQIVIQNAEDSRLASAVMSLPIKYREVIYLFYYEELSIKEIAT
EEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHEEHHHCCHHHHHHHHH
VIEVKENTIKTRLKKAKELLKKGLEE
HHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]