Click here to switch to the map view.

The map label for this gene is oppD [C]

Identifier: 49183886

GI number: 49183886

Start: 925911

End: 926426

Strand: Direct

Name: oppD [C]

Synonym: BAS0862

Alternate gene names: 49183886

Gene position: 925911-926426 (Clockwise)

Preceding gene: 49183885

Following gene: 49183887

Centisome position: 17.71

GC content: 43.41

Gene sequence:

>516_bases
ATGAAGCAGCGGGTTATGATTGCGATGGCGATGTCTTGTAATCCAGATCTTCTCATTGCGGATGAACCGACGACAGCGCT
TGATGTAACGATACAAGCGCAAATACTAGACTTAATGAAAAACTTAAAAAATGAAACGAATATGGCGCTACTTCTTATTA
CGCATGATTTAGGAATAGTCGCGCAAAACTGTACACGCGTTATCGTTATGTATGGCGGGCTTATTATGGAAGAAGGACCT
GTACTTGATATTTTCCAATCACCGAATCATCCATATACGAAAGGGCTATTAAACTCTTTGCCAAAAATATCGAACGGCGT
AAAAGAAAGACTTGCGCCAATTCAAGGTGTAACGCCAAACTTATTACATCCGCCGAAAGGTTGCCCATTCGCAGAGCGTT
GCCCGCATGCGATGGACATTTGTGAAAAAGAACGTCCGCCGTATTTTGAAATCGGAGACGGAAGGCGTTCCATGTGCTGG
TTAAATGATAGGGCGGTAGGTGATTCACATGCATGA

Upstream 100 bases:

>100_bases
GAAAGAAGCAGAGCAGATCGCAATCAACTTGTTAAAGCAAGTTGGCCTTTCGTCACCAGAATAAAGGGTAAAACAATATC
CGCATGAACTAAGCGGTGGT

Downstream 100 bases:

>100_bases
AGAAAACTTAATTGAAGTGCGGAACTCAAAAAAGTATTTTCCTATTAAAAAAGGACCATTCGGCAGAAAAACAGAGCAAT
TAAAAGCAGTTGATGACCTA

Product: ABC transporter

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MKQRVMIAMAMSCNPDLLIADEPTTALDVTIQAQILDLMKNLKNETNMALLLITHDLGIVAQNCTRVIVMYGGLIMEEGP
VLDIFQSPNHPYTKGLLNSLPKISNGVKERLAPIQGVTPNLLHPPKGCPFAERCPHAMDICEKERPPYFEIGDGRRSMCW
LNDRAVGDSHA

Sequences:

>Translated_171_residues
MKQRVMIAMAMSCNPDLLIADEPTTALDVTIQAQILDLMKNLKNETNMALLLITHDLGIVAQNCTRVIVMYGGLIMEEGP
VLDIFQSPNHPYTKGLLNSLPKISNGVKERLAPIQGVTPNLLHPPKGCPFAERCPHAMDICEKERPPYFEIGDGRRSMCW
LNDRAVGDSHA
>Mature_171_residues
MKQRVMIAMAMSCNPDLLIADEPTTALDVTIQAQILDLMKNLKNETNMALLLITHDLGIVAQNCTRVIVMYGGLIMEEGP
VLDIFQSPNHPYTKGLLNSLPKISNGVKERLAPIQGVTPNLLHPPKGCPFAERCPHAMDICEKERPPYFEIGDGRRSMCW
LNDRAVGDSHA

Specific function: Probably part of a binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for energy coupling to the transport system [H]

COG id: COG0444

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI48994883, Length=160, Percent_Identity=55.625, Blast_Score=177, Evalue=3e-46,
Organism=Escherichia coli, GI1789963, Length=159, Percent_Identity=54.0880503144654, Blast_Score=175, Evalue=1e-45,
Organism=Escherichia coli, GI1787759, Length=168, Percent_Identity=47.6190476190476, Blast_Score=150, Evalue=4e-38,
Organism=Escherichia coli, GI145693107, Length=133, Percent_Identity=52.6315789473684, Blast_Score=134, Evalue=2e-33,
Organism=Escherichia coli, GI1787758, Length=159, Percent_Identity=40.251572327044, Blast_Score=126, Evalue=7e-31,
Organism=Escherichia coli, GI1789962, Length=163, Percent_Identity=36.8098159509202, Blast_Score=122, Evalue=1e-29,
Organism=Escherichia coli, GI1787500, Length=147, Percent_Identity=42.1768707482993, Blast_Score=117, Evalue=3e-28,
Organism=Escherichia coli, GI1788506, Length=100, Percent_Identity=57, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1787548, Length=141, Percent_Identity=39.7163120567376, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI1789890, Length=99, Percent_Identity=46.4646464646465, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI48994997, Length=100, Percent_Identity=41, Blast_Score=89, Evalue=1e-19,
Organism=Escherichia coli, GI1786398, Length=98, Percent_Identity=36.734693877551, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1787547, Length=96, Percent_Identity=32.2916666666667, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI1789891, Length=75, Percent_Identity=45.3333333333333, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788644, Length=97, Percent_Identity=35.0515463917526, Blast_Score=68, Evalue=3e-13,
Organism=Escherichia coli, GI1788225, Length=99, Percent_Identity=31.3131313131313, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI1786872, Length=99, Percent_Identity=36.3636363636364, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1787089, Length=97, Percent_Identity=37.1134020618557, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1787370, Length=110, Percent_Identity=30, Blast_Score=64, Evalue=5e-12,
Organism=Escherichia coli, GI1789672, Length=99, Percent_Identity=33.3333333333333, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1787029, Length=78, Percent_Identity=35.8974358974359, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 18934; Mature: 18934

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
9.4 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
9.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQRVMIAMAMSCNPDLLIADEPTTALDVTIQAQILDLMKNLKNETNMALLLITHDLGIV
CCCEEEEEEEECCCCCEEEECCCCCEEEEEHHHHHHHHHHHCCCCCCEEEEEEECCCHHH
AQNCTRVIVMYGGLIMEEGPVLDIFQSPNHPYTKGLLNSLPKISNGVKERLAPIQGVTPN
HHHHHEEEHHHCCEEECCCCEEEEECCCCCCHHHHHHHHCHHHHHHHHHHHHCCCCCCCC
LLHPPKGCPFAERCPHAMDICEKERPPYFEIGDGRRSMCWLNDRAVGDSHA
CCCCCCCCCHHHHCCHHHHHHHCCCCCEEEECCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure
MKQRVMIAMAMSCNPDLLIADEPTTALDVTIQAQILDLMKNLKNETNMALLLITHDLGIV
CCCEEEEEEEECCCCCEEEECCCCCEEEEEHHHHHHHHHHHCCCCCCEEEEEEECCCHHH
AQNCTRVIVMYGGLIMEEGPVLDIFQSPNHPYTKGLLNSLPKISNGVKERLAPIQGVTPN
HHHHHEEEHHHCCEEECCCCEEEEECCCCCCHHHHHHHHCHHHHHHHHHHHHCCCCCCCC
LLHPPKGCPFAERCPHAMDICEKERPPYFEIGDGRRSMCWLNDRAVGDSHA
CCCCCCCCCHHHHCCHHHHHHHCCCCCEEEECCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8796346; 9163424 [H]