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The map label for this gene is oppD [H]

Identifier: 49183885

GI number: 49183885

Start: 925434

End: 925874

Strand: Direct

Name: oppD [H]

Synonym: BAS0861

Alternate gene names: 49183885

Gene position: 925434-925874 (Clockwise)

Preceding gene: 49183884

Following gene: 49183886

Centisome position: 17.7

GC content: 38.1

Gene sequence:

>441_bases
GTGTCTGAAAAACTACTAGAAGTGAAAAATTTAAAGACTTCTTTTTTCATAGAAATTGGAGAAGTGGAAGCCGTTCGCGG
CGTTACATTTCGTTTAAATAAGGGAGAAGTAGTTGGTATCGTTGGGGAGTCTGGAAGCGGAAAGAGTGTAATGGCGAAGT
CCGTTATGTCTCTCGTTACGTCACCAGGGAAAGTGAAAGAAGGAGAGATTCTTTTTCATAATGAAAACATCCTTTCTAAA
TCTGAAAAAGAATTACGTTCTATTAGAGGAAATCAAATTTCACTTATCTCCCAAGATCCAATGTCTGCGCTAAATCCGGT
CGTGAAAATTGGGAAACAGATGATGGAAGTAATTATACGTCATCAAAAAGTGAAAAAGAAAGAAGCAGAGCAGATCGCAA
TCAACTTGTTAAAGCAAGTTGGCCTTTCGTCACCAGAATAA

Upstream 100 bases:

>100_bases
TATTAAGTTTTAATGTAATTGGTGAAGCGTTGAAGAAAGCTTTCGCACCAAAAGGAGCTGGAAATGAAAACTAAAGTGTT
AAGTGAAAGGAGTGAGAAGC

Downstream 100 bases:

>100_bases
AGGGTAAAACAATATCCGCATGAACTAAGCGGTGGTATGAAGCAGCGGGTTATGATTGCGATGGCGATGTCTTGTAATCC
AGATCTTCTCATTGCGGATG

Product: ABC transporter

Products: NA

Alternate protein names: Stage 0 sporulation protein KD [H]

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MSEKLLEVKNLKTSFFIEIGEVEAVRGVTFRLNKGEVVGIVGESGSGKSVMAKSVMSLVTSPGKVKEGEILFHNENILSK
SEKELRSIRGNQISLISQDPMSALNPVVKIGKQMMEVIIRHQKVKKKEAEQIAINLLKQVGLSSPE

Sequences:

>Translated_146_residues
MSEKLLEVKNLKTSFFIEIGEVEAVRGVTFRLNKGEVVGIVGESGSGKSVMAKSVMSLVTSPGKVKEGEILFHNENILSK
SEKELRSIRGNQISLISQDPMSALNPVVKIGKQMMEVIIRHQKVKKKEAEQIAINLLKQVGLSSPE
>Mature_145_residues
SEKLLEVKNLKTSFFIEIGEVEAVRGVTFRLNKGEVVGIVGESGSGKSVMAKSVMSLVTSPGKVKEGEILFHNENILSKS
EKELRSIRGNQISLISQDPMSALNPVVKIGKQMMEVIIRHQKVKKKEAEQIAINLLKQVGLSSPE

Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]

COG id: COG0444

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1787759, Length=141, Percent_Identity=43.9716312056738, Blast_Score=124, Evalue=2e-30,
Organism=Escherichia coli, GI48994883, Length=139, Percent_Identity=42.4460431654676, Blast_Score=118, Evalue=2e-28,
Organism=Escherichia coli, GI1789963, Length=141, Percent_Identity=43.2624113475177, Blast_Score=117, Evalue=3e-28,
Organism=Escherichia coli, GI1788506, Length=143, Percent_Identity=38.4615384615385, Blast_Score=106, Evalue=7e-25,
Organism=Escherichia coli, GI145693107, Length=142, Percent_Identity=36.6197183098592, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787500, Length=148, Percent_Identity=35.1351351351351, Blast_Score=88, Evalue=2e-19,
Organism=Escherichia coli, GI1787548, Length=144, Percent_Identity=34.0277777777778, Blast_Score=83, Evalue=6e-18,
Organism=Escherichia coli, GI1789962, Length=150, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=1e-14,
Organism=Escherichia coli, GI1787547, Length=148, Percent_Identity=33.1081081081081, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI48994997, Length=135, Percent_Identity=31.1111111111111, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 16030; Mature: 15899

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKLLEVKNLKTSFFIEIGEVEAVRGVTFRLNKGEVVGIVGESGSGKSVMAKSVMSLVT
CCCHHHHHHCCCEEEEEEECCEEEECCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHC
SPGKVKEGEILFHNENILSKSEKELRSIRGNQISLISQDPMSALNPVVKIGKQMMEVIIR
CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
HQKVKKKEAEQIAINLLKQVGLSSPE
HHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SEKLLEVKNLKTSFFIEIGEVEAVRGVTFRLNKGEVVGIVGESGSGKSVMAKSVMSLVT
CCHHHHHHCCCEEEEEEECCEEEECCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHC
SPGKVKEGEILFHNENILSKSEKELRSIRGNQISLISQDPMSALNPVVKIGKQMMEVIIR
CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
HQKVKKKEAEQIAINLLKQVGLSSPE
HHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1901616; 1899858; 9384377 [H]