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The map label for this gene is xerD [H]

Identifier: 46447551

GI number: 46447551

Start: 2280713

End: 2280961

Strand: Reverse

Name: xerD [H]

Synonym: pc1917

Alternate gene names: 46447551

Gene position: 2280961-2280713 (Counterclockwise)

Preceding gene: 46447552

Following gene: 46447547

Centisome position: 94.47

GC content: 38.55

Gene sequence:

>249_bases
ATGGATAAAGCTTTAACTTCCAAATCTGTCGCATTGATTATTAAGCGGAACAAACATTTAGAAAAGCAAAAACATTCATT
CTCAGGACATAGCTTACGGGCTGGATTTGCTACAACCGCTGCCATCTTTGGTGTTCCTGAGCATCTGATCATGAATCAAA
CAGGTCATAAAAGCTCTGATACCATTAGAAGGTATATTCGATTGGGAAACATGTGGATGGAAAACGCCGCCACTAAAATT
GGTTTATAA

Upstream 100 bases:

>100_bases
CATTCTCACTTGCCCTGTCAGAACTTTAAAAAATTAGCTTAATTGTTCTAAAATTAACGAAGGGACATTATTTCGACCGA
TTAATCGGCATGGTCAAATT

Downstream 100 bases:

>100_bases
GCTTAATTTCCATCCTATAATACATCTTATAGCGGATATTTCTATTAAATAAGCGCCTCAATGGAAATTGATCAACTTTA
ATGAAATTTTATCCTTAATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 82; Mature: 82

Protein sequence:

>82_residues
MDKALTSKSVALIIKRNKHLEKQKHSFSGHSLRAGFATTAAIFGVPEHLIMNQTGHKSSDTIRRYIRLGNMWMENAATKI
GL

Sequences:

>Translated_82_residues
MDKALTSKSVALIIKRNKHLEKQKHSFSGHSLRAGFATTAAIFGVPEHLIMNQTGHKSSDTIRRYIRLGNMWMENAATKI
GL
>Mature_82_residues
MDKALTSKSVALIIKRNKHLEKQKHSFSGHSLRAGFATTAAIFGVPEHLIMNQTGHKSSDTIRRYIRLGNMWMENAATKI
GL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 9163; Mature: 9163

Theoretical pI: Translated: 11.23; Mature: 11.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKALTSKSVALIIKRNKHLEKQKHSFSGHSLRAGFATTAAIFGVPEHLIMNQTGHKSSD
CCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCCCHH
TIRRYIRLGNMWMENAATKIGL
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDKALTSKSVALIIKRNKHLEKQKHSFSGHSLRAGFATTAAIFGVPEHLIMNQTGHKSSD
CCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCCCHH
TIRRYIRLGNMWMENAATKIGL
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11073919 [H]