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The map label for this gene is omp85 [H]

Identifier: 46447360

GI number: 46447360

Start: 2063055

End: 2065502

Strand: Direct

Name: omp85 [H]

Synonym: pc1726

Alternate gene names: 46447360

Gene position: 2063055-2065502 (Clockwise)

Preceding gene: 46447358

Following gene: 46447361

Centisome position: 85.45

GC content: 34.89

Gene sequence:

>2448_bases
ATGTGTACTCACTTGAATGAAGGGTTTTTCTCTAAAATTTGCGTTCAAGTTAATAATGATGCAAAGAGGCTTTCTTTTTT
GCCAACGCTAAGGTTTGTTATGTTGAAGAAAATTTTTTTTACGTTTTATTGCTTTTCCTTCCTTTTTCTTCATGCTGTAT
ATGGCCAAATTCTACAGTTTGAAAATCAAGCTATTAATAAAATAGAGATCCAAGTTCATAGTCGTGCGGGAATCATTACC
GATAACCAAACCTTAATGAGTCGTTTACGTACACAACCTGGAGGATTTTTTTCACAGGCTGATTTTGATGAAGATTTAAA
AACATTGGCTCAAGAATTCGATCGAGTCGATCCAATTGTCAATACAACAGAAGAAAAAGTATCGATCACACTTAACCTTT
GGCCAAAACCAACAATTCGAAATATTCATTGGTGTGGAAACCATCGAGTGAGCACTAATCGCCTTCAAAAAGAGTTAGGG
ATTGGGTGTTTTGTCACTTTTGAGCGCCAAGCCTTTAATCAAGCTTTTCACAAATTGAAGGCTTACTACATTCGCAAAGG
TTTTTTTGAAGCTCAATTAAATTATCATGTCGAACTTAATTCTGAAACAAATGAAGTAAACATTACCATTGAAATTCAAG
AAGGACGTTCAGGAAAAATACAAGAAATCGATTTTGTAAATTTTAGTGAAAAAGAAGAGCACGAAATATTAAGTCAAATG
ATGACTAAAAAATATAATATTTTTCTAAGCTGGTTTAGCGAGGAAGGTACCTATAACGAAGACGCTATCCAACAAGATCG
ACTCATTATTACCAATTATTTGCAAAATCAAGGTTATGCAGATGCTTCTGTTGAAATCAACGTCATGGAAGCTAGTAAAA
CAGATCGAATCATCGTGACGATCATCGCCGATAAAGGAGAGCGGTACTATTTTGGCCGTTTATCTTTTGAAGGCAACCAA
ATTATTTGTGATGAAGAAATTGATCGACTTTTTGGTATTCGTCAAGGAGAATTTTTTTCAATCGAAAGTATTCGAGAGAC
AATAGAAACATTAACTGATGCTTATGGTCGTTTAGGATATGTTGACGCAATCATCGATTTTGAACCAGAGTTAGATGAGC
GTGACTACAAATATCATGTTAACTTTAAAATTGAAGAAGGTGAACAATTTTATGTAGGATTGGTTCGCGTCTTCGGAAAC
CTTTCGACGAAAACATCTGTGATCCTCCATGAAACACTGATGATTCCTGGAGAAATATTTAATACGATTAAATTAAAAGC
CACAGAGCAAAGGCTTATTAACATTGGTTATTTCAAACATGTTAACGTTTATATTGTTAAAGGAACAGAATCTACTTTAG
GAAACAACTATAGAGATGTTTATATCGAAGTCGAGGAAACGAATACAGGACAATTTAGTGCTTTTGTTGGTTACAGTAGT
GTGGAAGAGCTTTTTGGAGGAATCAACATTACTGAAAGAAACTTTAATCATGAAGGTTTCTATTATCTCTGGCGAGATGG
ATTAAGAGCGTTAAGAGGTGGAGGAGAATATGCACAGTTTAACATACAAATAGGACAAAAAAGCCGAAACTATACTTTTT
CTTGGACAAAACCCTATTTTATGGATACAAAATGGACTATTGGTTTTGACTTATCTAAAGCAAGCACTCGCTATATTTCT
AAAGACTATGATCTTGATACAGTTTCTTTAATATTAAGAGCTAATTATAATATTAACCAATTCGTTCGCTTTGGAGTTCA
ATACCGGCTAAAAAATGGTGTTGTTCATTTAGGTCATCGGGGAGATCACATTCCTAAATTAGAACATGATGCACATATTC
ATGGATTAATATCCGCTATCGGAACCTCTTTAAATTATGACTCTACAGATCATCCTATTAAACCAACAGCGGGATTTAGA
TCAAAACTCTTAATCGAATATGCTGGCTTAGGCGGTGATCACCAATTTTTTAGCTTGGGATATTTTAATTCTTATTATTA
TCCGGTTGGAAGCAGAATGGTATTAAAATATCGAGCCGACTTGCGTTTTATTCAACCTATGGGCCACACGCGCTATGATA
TTTTACCTTTAGATGAGCGTATTTTTTTAGGGGGAGACTACAACGTACGAGGTTTTAGACCTTATCGATTAGGTCCTCAG
TATAAGAATACACATGTACCTCGCGGAGGACTTTCAATGCAGTTTTACTCAGTCGAATTATCGAGAAAAATTATGGGTGA
ATTTGAAATTTTTACTTTTCTAGATGCAGGTCATCTTTCTGAGGACACATGGGAATTTGGTCGAATGAGTGTATCTGTAG
GATATGGAACTCGATTTAAGCTGCTAGCTAGCGTCCCTCCAATTACCCTTGGAATGGGATATCCTTTAAATGCAAAAAAT
CGAAGTGAAGTAAAAAAATTCTTTTTTTCTTTAGGTGGAAATTTTTAA

Upstream 100 bases:

>100_bases
TGAGGCCCTAACATTCTAAAAAAAAAGCTAGCCATTCCGAAAACAAGTGAGTTCTAGTTGCAAAATAGCTCTCATTCGCC
TATGATCACTTAACTTTTCT

Downstream 100 bases:

>100_bases
ACAACATTTTTGGAACTAAATTGTTCATTAGCTGAAAATAATGGCGGTTCTGAAGAACTATAGATGAAATGTGAGTATTT
ACAAGGAGAAGACTTATGAA

Product: putative outer membrane protein Omp85

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 815; Mature: 815

Protein sequence:

>815_residues
MCTHLNEGFFSKICVQVNNDAKRLSFLPTLRFVMLKKIFFTFYCFSFLFLHAVYGQILQFENQAINKIEIQVHSRAGIIT
DNQTLMSRLRTQPGGFFSQADFDEDLKTLAQEFDRVDPIVNTTEEKVSITLNLWPKPTIRNIHWCGNHRVSTNRLQKELG
IGCFVTFERQAFNQAFHKLKAYYIRKGFFEAQLNYHVELNSETNEVNITIEIQEGRSGKIQEIDFVNFSEKEEHEILSQM
MTKKYNIFLSWFSEEGTYNEDAIQQDRLIITNYLQNQGYADASVEINVMEASKTDRIIVTIIADKGERYYFGRLSFEGNQ
IICDEEIDRLFGIRQGEFFSIESIRETIETLTDAYGRLGYVDAIIDFEPELDERDYKYHVNFKIEEGEQFYVGLVRVFGN
LSTKTSVILHETLMIPGEIFNTIKLKATEQRLINIGYFKHVNVYIVKGTESTLGNNYRDVYIEVEETNTGQFSAFVGYSS
VEELFGGINITERNFNHEGFYYLWRDGLRALRGGGEYAQFNIQIGQKSRNYTFSWTKPYFMDTKWTIGFDLSKASTRYIS
KDYDLDTVSLILRANYNINQFVRFGVQYRLKNGVVHLGHRGDHIPKLEHDAHIHGLISAIGTSLNYDSTDHPIKPTAGFR
SKLLIEYAGLGGDHQFFSLGYFNSYYYPVGSRMVLKYRADLRFIQPMGHTRYDILPLDERIFLGGDYNVRGFRPYRLGPQ
YKNTHVPRGGLSMQFYSVELSRKIMGEFEIFTFLDAGHLSEDTWEFGRMSVSVGYGTRFKLLASVPPITLGMGYPLNAKN
RSEVKKFFFSLGGNF

Sequences:

>Translated_815_residues
MCTHLNEGFFSKICVQVNNDAKRLSFLPTLRFVMLKKIFFTFYCFSFLFLHAVYGQILQFENQAINKIEIQVHSRAGIIT
DNQTLMSRLRTQPGGFFSQADFDEDLKTLAQEFDRVDPIVNTTEEKVSITLNLWPKPTIRNIHWCGNHRVSTNRLQKELG
IGCFVTFERQAFNQAFHKLKAYYIRKGFFEAQLNYHVELNSETNEVNITIEIQEGRSGKIQEIDFVNFSEKEEHEILSQM
MTKKYNIFLSWFSEEGTYNEDAIQQDRLIITNYLQNQGYADASVEINVMEASKTDRIIVTIIADKGERYYFGRLSFEGNQ
IICDEEIDRLFGIRQGEFFSIESIRETIETLTDAYGRLGYVDAIIDFEPELDERDYKYHVNFKIEEGEQFYVGLVRVFGN
LSTKTSVILHETLMIPGEIFNTIKLKATEQRLINIGYFKHVNVYIVKGTESTLGNNYRDVYIEVEETNTGQFSAFVGYSS
VEELFGGINITERNFNHEGFYYLWRDGLRALRGGGEYAQFNIQIGQKSRNYTFSWTKPYFMDTKWTIGFDLSKASTRYIS
KDYDLDTVSLILRANYNINQFVRFGVQYRLKNGVVHLGHRGDHIPKLEHDAHIHGLISAIGTSLNYDSTDHPIKPTAGFR
SKLLIEYAGLGGDHQFFSLGYFNSYYYPVGSRMVLKYRADLRFIQPMGHTRYDILPLDERIFLGGDYNVRGFRPYRLGPQ
YKNTHVPRGGLSMQFYSVELSRKIMGEFEIFTFLDAGHLSEDTWEFGRMSVSVGYGTRFKLLASVPPITLGMGYPLNAKN
RSEVKKFFFSLGGNF
>Mature_815_residues
MCTHLNEGFFSKICVQVNNDAKRLSFLPTLRFVMLKKIFFTFYCFSFLFLHAVYGQILQFENQAINKIEIQVHSRAGIIT
DNQTLMSRLRTQPGGFFSQADFDEDLKTLAQEFDRVDPIVNTTEEKVSITLNLWPKPTIRNIHWCGNHRVSTNRLQKELG
IGCFVTFERQAFNQAFHKLKAYYIRKGFFEAQLNYHVELNSETNEVNITIEIQEGRSGKIQEIDFVNFSEKEEHEILSQM
MTKKYNIFLSWFSEEGTYNEDAIQQDRLIITNYLQNQGYADASVEINVMEASKTDRIIVTIIADKGERYYFGRLSFEGNQ
IICDEEIDRLFGIRQGEFFSIESIRETIETLTDAYGRLGYVDAIIDFEPELDERDYKYHVNFKIEEGEQFYVGLVRVFGN
LSTKTSVILHETLMIPGEIFNTIKLKATEQRLINIGYFKHVNVYIVKGTESTLGNNYRDVYIEVEETNTGQFSAFVGYSS
VEELFGGINITERNFNHEGFYYLWRDGLRALRGGGEYAQFNIQIGQKSRNYTFSWTKPYFMDTKWTIGFDLSKASTRYIS
KDYDLDTVSLILRANYNINQFVRFGVQYRLKNGVVHLGHRGDHIPKLEHDAHIHGLISAIGTSLNYDSTDHPIKPTAGFR
SKLLIEYAGLGGDHQFFSLGYFNSYYYPVGSRMVLKYRADLRFIQPMGHTRYDILPLDERIFLGGDYNVRGFRPYRLGPQ
YKNTHVPRGGLSMQFYSVELSRKIMGEFEIFTFLDAGHLSEDTWEFGRMSVSVGYGTRFKLLASVPPITLGMGYPLNAKN
RSEVKKFFFSLGGNF

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Escherichia coli, GI1786374, Length=862, Percent_Identity=19.7215777262181, Blast_Score=121, Evalue=2e-28,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 94406; Mature: 94406

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCTHLNEGFFSKICVQVNNDAKRLSFLPTLRFVMLKKIFFTFYCFSFLFLHAVYGQILQF
CCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENQAINKIEIQVHSRAGIITDNQTLMSRLRTQPGGFFSQADFDEDLKTLAQEFDRVDPIV
CCCCCEEEEEEEECCCCEEECCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
NTTEEKVSITLNLWPKPTIRNIHWCGNHRVSTNRLQKELGIGCFVTFERQAFNQAFHKLK
CCCCCEEEEEEEECCCCCCCEEEECCCCCCCHHHHHHHHCCEEEEEECHHHHHHHHHHHH
AYYIRKGFFEAQLNYHVELNSETNEVNITIEIQEGRSGKIQEIDFVNFSEKEEHEILSQM
HHHHHCCEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHH
MTKKYNIFLSWFSEEGTYNEDAIQQDRLIITNYLQNQGYADASVEINVMEASKTDRIIVT
HHCCEEEEEEEECCCCCCCHHHHCCCCEEEEHHHHCCCCCCCEEEEEEEECCCCCEEEEE
IIADKGERYYFGRLSFEGNQIICDEEIDRLFGIRQGEFFSIESIRETIETLTDAYGRLGY
EEECCCCEEEEEEEEECCCEEEEHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCCCEE
VDAIIDFEPELDERDYKYHVNFKIEEGEQFYVGLVRVFGNLSTKTSVILHETLMIPGEIF
EEEEEECCCCCCCCCEEEEEEEEEECCCEEHHHHHHHHCCCCCCEEEEEEEEEECCHHHH
NTIKLKATEQRLINIGYFKHVNVYIVKGTESTLGNNYRDVYIEVEETNTGQFSAFVGYSS
CEEEEEECHHHEEEEEEEEEEEEEEEECCCHHHCCCEEEEEEEEEECCCCCEEEEECHHH
VEELFGGINITERNFNHEGFYYLWRDGLRALRGGGEYAQFNIQIGQKSRNYTFSWTKPYF
HHHHHCCCEEEECCCCCCCEEEEEHHHHHHHHCCCCEEEEEEEECCCCCCEEEEECCCEE
MDTKWTIGFDLSKASTRYISKDYDLDTVSLILRANYNINQFVRFGVQYRLKNGVVHLGHR
ECCEEEEEEECCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHCEEEEECCCEEEECCC
GDHIPKLEHDAHIHGLISAIGTSLNYDSTDHPIKPTAGFRSKLLIEYAGLGGDHQFFSLG
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEE
YFNSYYYPVGSRMVLKYRADLRFIQPMGHTRYDILPLDERIFLGGDYNVRGFRPYRLGPQ
CCCCEEECCCCEEEEEEECCEEEECCCCCCEEEEEECCCEEEECCCCCCCCEECCCCCCC
YKNTHVPRGGLSMQFYSVELSRKIMGEFEIFTFLDAGHLSEDTWEFGRMSVSVGYGTRFK
CCCCCCCCCCCEEEEEEEEHHHHHHCCEEEEEEEECCCCCCCCHHHCCEEEEECCCCEEE
LLASVPPITLGMGYPLNAKNRSEVKKFFFSLGGNF
EEECCCCEEEECCCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MCTHLNEGFFSKICVQVNNDAKRLSFLPTLRFVMLKKIFFTFYCFSFLFLHAVYGQILQF
CCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENQAINKIEIQVHSRAGIITDNQTLMSRLRTQPGGFFSQADFDEDLKTLAQEFDRVDPIV
CCCCCEEEEEEEECCCCEEECCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
NTTEEKVSITLNLWPKPTIRNIHWCGNHRVSTNRLQKELGIGCFVTFERQAFNQAFHKLK
CCCCCEEEEEEEECCCCCCCEEEECCCCCCCHHHHHHHHCCEEEEEECHHHHHHHHHHHH
AYYIRKGFFEAQLNYHVELNSETNEVNITIEIQEGRSGKIQEIDFVNFSEKEEHEILSQM
HHHHHCCEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHH
MTKKYNIFLSWFSEEGTYNEDAIQQDRLIITNYLQNQGYADASVEINVMEASKTDRIIVT
HHCCEEEEEEEECCCCCCCHHHHCCCCEEEEHHHHCCCCCCCEEEEEEEECCCCCEEEEE
IIADKGERYYFGRLSFEGNQIICDEEIDRLFGIRQGEFFSIESIRETIETLTDAYGRLGY
EEECCCCEEEEEEEEECCCEEEEHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCCCEE
VDAIIDFEPELDERDYKYHVNFKIEEGEQFYVGLVRVFGNLSTKTSVILHETLMIPGEIF
EEEEEECCCCCCCCCEEEEEEEEEECCCEEHHHHHHHHCCCCCCEEEEEEEEEECCHHHH
NTIKLKATEQRLINIGYFKHVNVYIVKGTESTLGNNYRDVYIEVEETNTGQFSAFVGYSS
CEEEEEECHHHEEEEEEEEEEEEEEEECCCHHHCCCEEEEEEEEEECCCCCEEEEECHHH
VEELFGGINITERNFNHEGFYYLWRDGLRALRGGGEYAQFNIQIGQKSRNYTFSWTKPYF
HHHHHCCCEEEECCCCCCCEEEEEHHHHHHHHCCCCEEEEEEEECCCCCCEEEEECCCEE
MDTKWTIGFDLSKASTRYISKDYDLDTVSLILRANYNINQFVRFGVQYRLKNGVVHLGHR
ECCEEEEEEECCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHCEEEEECCCEEEECCC
GDHIPKLEHDAHIHGLISAIGTSLNYDSTDHPIKPTAGFRSKLLIEYAGLGGDHQFFSLG
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEE
YFNSYYYPVGSRMVLKYRADLRFIQPMGHTRYDILPLDERIFLGGDYNVRGFRPYRLGPQ
CCCCEEECCCCEEEEEEECCEEEECCCCCCEEEEEECCCEEEECCCCCCCCEECCCCCCC
YKNTHVPRGGLSMQFYSVELSRKIMGEFEIFTFLDAGHLSEDTWEFGRMSVSVGYGTRFK
CCCCCCCCCCCEEEEEEEEHHHHHHCCEEEEEEEECCCCCCCCHHHCCEEEEECCCCEEE
LLASVPPITLGMGYPLNAKNRSEVKKFFFSLGGNF
EEECCCCEEEECCCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]