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The map label for this gene is rarA [H]

Identifier: 46447333

GI number: 46447333

Start: 2037227

End: 2038495

Strand: Direct

Name: rarA [H]

Synonym: pc1699

Alternate gene names: 46447333

Gene position: 2037227-2038495 (Clockwise)

Preceding gene: 46447332

Following gene: 46447335

Centisome position: 84.38

GC content: 38.06

Gene sequence:

>1269_bases
ATGATAAAAAAAGTTCTGCCTCTCGCTGAACAGCTACGGCCTAAAAACTTAAATGATATTGTCGGACAGGACCACATTTT
AGGAGAAAACGGGTTAATCACTAAAACGATTGAATCTCAAATACCCTTATCGGTTATTTTATGGGGGCCGCCAGGCTGCG
GTAAAACCTCTATTGCTCGCCTTTATGCACAAGCATTCAATATGCAATTTATTTCGATGAGCGCAATATTTAGCGGTGTG
GCGGATTTAAAAAAAACGATTAAAGAAGCACAAAATCAACCTCTTTTTCACAAAGGAACTCTTTTATTCGTTGATGAGAT
ACATCGGTTTAATAAATCTCAACAAGATGCATTTCTTCCTTTTGTTGAAAATGGAACGATTATTTTAATTGGAGCTACCA
CTGAAAATCCTTCTTTTTATTTAAATGGAGCTTTATTGTCTCGGCTCCGAGTCTTGCCGATTTATCCCTTAGATGGATTT
AGTCTCGAGCAACTTTTAGAACGCTATGAAAAGCAATTCGCACCATTGCCTCTAACTGCAGAAGCTCGTCATTGGTTAAT
TACTTGCGCGCAAGGCGATGGTCGTTACTTATATAACTTAATAGAAAATTTAAGGTATGCCTCAAAGCAAATTTTAGATA
TCCCTTTACTTGAAAAAATTTTTCAAAAACGCTCTCCCCTTTTTGATAAAAGAGGAGATCAACATTATAATCTCATTTCA
GCATTGCATAAGTCTGTGAGGGGATCTGATCCAAATGCCGCTATTTATTGGTTCACGAGAATGTTAGAAGGTGGTGAAGA
ACCTCTTTTTTTAGCCAGACGTTTGATTCGCATGGCAGTTGAGGATATTGGATTGAGTGACCCGCAAGCCCTTCCCTTAG
CAATTGCAGCAAAAGATGCTTATGAAATGTTAGGTTCTCCTGAAGGAGAACTTGCCCTCGCAGAAGTCGTCATTTACCTT
GCTTTGGCTCCCAAAAGTAATGCAGTCTATCGCGCTTTTGGAATGGCAAAAGAAAGCGCTTCTAAAACAAGCTATTTAAA
CCCTCCCTTAACAATTCTCAACGCGCCAACTAAAATGATGAAAAACTTAGGTTATGGAAAAGACTATCAATATGATCCTG
ATTTACCAGAAGCATTTTCCGGACAAAATTATTTTCCTGACAGCTTAGAAAAGCAACATTTCTATGAGCCTGTCGAAAGA
GGGTTCGAACGCGAGCTTAAAAAACGATTAGAATATTTTGAACAATTGCGACTTAAAAAGAAATTATGA

Upstream 100 bases:

>100_bases
ATGGCATTTATGCTCTCCTGGTTTTTAGCTTACCCTCTCTTTTTTTACCCAAAAGACAGGTTTTTAGAAGAAATAAAGTG
ATTTTACAAAGAGAGAACAA

Downstream 100 bases:

>100_bases
AGATGGAGAAGTTTCATGTTCCAAAACCTTCTTGGCAGAAGTTTGTTCTTTGCGAATGCAATCTATAAACATTTTACTTT
TAGCTAACTGCATCTTATCT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MIKKVLPLAEQLRPKNLNDIVGQDHILGENGLITKTIESQIPLSVILWGPPGCGKTSIARLYAQAFNMQFISMSAIFSGV
ADLKKTIKEAQNQPLFHKGTLLFVDEIHRFNKSQQDAFLPFVENGTIILIGATTENPSFYLNGALLSRLRVLPIYPLDGF
SLEQLLERYEKQFAPLPLTAEARHWLITCAQGDGRYLYNLIENLRYASKQILDIPLLEKIFQKRSPLFDKRGDQHYNLIS
ALHKSVRGSDPNAAIYWFTRMLEGGEEPLFLARRLIRMAVEDIGLSDPQALPLAIAAKDAYEMLGSPEGELALAEVVIYL
ALAPKSNAVYRAFGMAKESASKTSYLNPPLTILNAPTKMMKNLGYGKDYQYDPDLPEAFSGQNYFPDSLEKQHFYEPVER
GFERELKKRLEYFEQLRLKKKL

Sequences:

>Translated_422_residues
MIKKVLPLAEQLRPKNLNDIVGQDHILGENGLITKTIESQIPLSVILWGPPGCGKTSIARLYAQAFNMQFISMSAIFSGV
ADLKKTIKEAQNQPLFHKGTLLFVDEIHRFNKSQQDAFLPFVENGTIILIGATTENPSFYLNGALLSRLRVLPIYPLDGF
SLEQLLERYEKQFAPLPLTAEARHWLITCAQGDGRYLYNLIENLRYASKQILDIPLLEKIFQKRSPLFDKRGDQHYNLIS
ALHKSVRGSDPNAAIYWFTRMLEGGEEPLFLARRLIRMAVEDIGLSDPQALPLAIAAKDAYEMLGSPEGELALAEVVIYL
ALAPKSNAVYRAFGMAKESASKTSYLNPPLTILNAPTKMMKNLGYGKDYQYDPDLPEAFSGQNYFPDSLEKQHFYEPVER
GFERELKKRLEYFEQLRLKKKL
>Mature_422_residues
MIKKVLPLAEQLRPKNLNDIVGQDHILGENGLITKTIESQIPLSVILWGPPGCGKTSIARLYAQAFNMQFISMSAIFSGV
ADLKKTIKEAQNQPLFHKGTLLFVDEIHRFNKSQQDAFLPFVENGTIILIGATTENPSFYLNGALLSRLRVLPIYPLDGF
SLEQLLERYEKQFAPLPLTAEARHWLITCAQGDGRYLYNLIENLRYASKQILDIPLLEKIFQKRSPLFDKRGDQHYNLIS
ALHKSVRGSDPNAAIYWFTRMLEGGEEPLFLARRLIRMAVEDIGLSDPQALPLAIAAKDAYEMLGSPEGELALAEVVIYL
ALAPKSNAVYRAFGMAKESASKTSYLNPPLTILNAPTKMMKNLGYGKDYQYDPDLPEAFSGQNYFPDSLEKQHFYEPVER
GFERELKKRLEYFEQLRLKKKL

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=443, Percent_Identity=41.7607223476298, Blast_Score=313, Evalue=2e-85,
Organism=Homo sapiens, GI18426904, Length=443, Percent_Identity=37.2460496613996, Blast_Score=259, Evalue=5e-69,
Organism=Escherichia coli, GI1787119, Length=424, Percent_Identity=43.6320754716981, Blast_Score=352, Evalue=3e-98,
Organism=Saccharomyces cerevisiae, GI6324111, Length=426, Percent_Identity=43.6619718309859, Blast_Score=315, Evalue=6e-87,
Organism=Saccharomyces cerevisiae, GI6324039, Length=271, Percent_Identity=26.1992619926199, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 47819; Mature: 47819

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKVLPLAEQLRPKNLNDIVGQDHILGENGLITKTIESQIPLSVILWGPPGCGKTSIAR
CCCHHHHHHHHCCCCCCHHHCCCCCEECCCCCEEEEHHCCCCEEEEEECCCCCCHHHHHH
LYAQAFNMQFISMSAIFSGVADLKKTIKEAQNQPLFHKGTLLFVDEIHRFNKSQQDAFLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEHHHHHHHCCCCCCCCCE
FVENGTIILIGATTENPSFYLNGALLSRLRVLPIYPLDGFSLEQLLERYEKQFAPLPLTA
EECCCEEEEEEECCCCCCEEECHHHHHHHHEEEECCCCCCCHHHHHHHHHHHCCCCCCCC
EARHWLITCAQGDGRYLYNLIENLRYASKQILDIPLLEKIFQKRSPLFDKRGDQHYNLIS
CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHH
ALHKSVRGSDPNAAIYWFTRMLEGGEEPLFLARRLIRMAVEDIGLSDPQALPLAIAAKDA
HHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHH
YEMLGSPEGELALAEVVIYLALAPKSNAVYRAFGMAKESASKTSYLNPPLTILNAPTKMM
HHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHH
KNLGYGKDYQYDPDLPEAFSGQNYFPDSLEKQHFYEPVERGFERELKKRLEYFEQLRLKK
HHCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KL
CC
>Mature Secondary Structure
MIKKVLPLAEQLRPKNLNDIVGQDHILGENGLITKTIESQIPLSVILWGPPGCGKTSIAR
CCCHHHHHHHHCCCCCCHHHCCCCCEECCCCCEEEEHHCCCCEEEEEECCCCCCHHHHHH
LYAQAFNMQFISMSAIFSGVADLKKTIKEAQNQPLFHKGTLLFVDEIHRFNKSQQDAFLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEHHHHHHHCCCCCCCCCE
FVENGTIILIGATTENPSFYLNGALLSRLRVLPIYPLDGFSLEQLLERYEKQFAPLPLTA
EECCCEEEEEEECCCCCCEEECHHHHHHHHEEEECCCCCCCHHHHHHHHHHHCCCCCCCC
EARHWLITCAQGDGRYLYNLIENLRYASKQILDIPLLEKIFQKRSPLFDKRGDQHYNLIS
CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHH
ALHKSVRGSDPNAAIYWFTRMLEGGEEPLFLARRLIRMAVEDIGLSDPQALPLAIAAKDA
HHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHH
YEMLGSPEGELALAEVVIYLALAPKSNAVYRAFGMAKESASKTSYLNPPLTILNAPTKMM
HHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHH
KNLGYGKDYQYDPDLPEAFSGQNYFPDSLEKQHFYEPVERGFERELKKRLEYFEQLRLKK
HHCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KL
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]