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The map label for this gene is gspD [H]

Identifier: 46447109

GI number: 46447109

Start: 1748552

End: 1751413

Strand: Direct

Name: gspD [H]

Synonym: pc1475

Alternate gene names: 46447109

Gene position: 1748552-1751413 (Clockwise)

Preceding gene: 46447108

Following gene: 46447110

Centisome position: 72.42

GC content: 38.61

Gene sequence:

>2862_bases
GTGGCTTCCGATGAAAAATATGATGAATTTGCCAAATCTTCGTCTGCCTATGTCAACCCAAGTTTGAATCAAGGAACAGG
AAACATTAAAATTGTCAAAAAGAAATCTTTTCAAAATGACAGTTTAAAAAATATTGTAGGGGTAACTTCTAACACTAAAA
CAGCTGTTGGGCAAGTTTCTTCCCTTCACGTTTCTTCTTCTGACGAATTAATGGATGATCTAGGTCATTTCTTAGCTAAT
GATGACAAACTCCTTGCACAACTAACAAATGGTGAACAATCTTCTTCCCTTTTAAATTTAAATATTCCTCTTGATTCCGA
TCACATTCCCCTTCCGATTTTAACTCCTTCTCAATATCCTAAAGAATCTCCTATTTCTCAACCTTCTCCTTCTCAAATTG
ATTTAGCGCCTTCTGCTTCACAACCCTCTCAATCTATTATCGATCGCCCTCAAGGATCCGTTGACTTACCAGATATCACC
CAACCACCAGCCAATCCTCAAAAAATCAACGAGAATAATCCGTCTATTCTTACTTCGCCTAGATCTGCAAACTCATCTCC
TGCCAAGGCCTCAACCAATCTTGAAACAGCTCCGCAAACAGACGTCCCTTCAAACGGGCAAGGTTTAAAAGAGATCTCGA
TTAATTTTAACAACGTTTCAATGATTGAATACATTCGATTTATCAGTCGAATCTCTAACAAAAATTTTATTTTTGATGAT
GAAGATTTACAATTTAATGTCACAATTGTTTCTGAAGAACCAACCTCTGTTGAAAACCTTATGGCAGCTCTTTTACAAGA
GCTCAGAATTCGTGATCTACTATTGATTGAACAAGGAAATAATTTAATTATCCATCGCAATTCTCGCGTACGTGCTCCCT
CACGAATTGTCTTTAGCGGAACAGAACCCACAACATTTGAAACAGAAATTGTCACTCGTGTATTTCGTTTAAATACCTTA
GATCCGCTCAAAGCCAGCGAAATTATTAGACCTCTTCTTTCAGAGGATGCTTTAATAGAGGTCTTACGCGACTCCAATAA
TCTAATTATCACAGATTTAGTTACTAATGTTAATAAAATTGCTCAACTAATTTCTACCCTCGATGCTCCTAATAGTGGAG
TGATAGTTGGACAATATGTGGTTCGAAATGCTTTTGTCGCTTCGCTTGCCGATTTGGCAACTAAAATTCTACAGCCAATT
GCGCAAGGAAATCCTTTCGTTTTAGTTCCTCATTCCTCAACCAATAGTATTTTTATCGTTTCTAATCCCTTCATTGTAGA
CAAAACTCTAGCTATTCTCGAAAATTTAGATATTAATGAAGGTAAAACTAAAATCCTTGATCTCGAGAAATTGCGTATAC
AGCAAGAAGAAGCTACTCGATTGAGATATCCACCAGGAACTCACCCAGGGGCCCCAGATAGCTCAGCCGTTCCGGAAGAA
CGAGATACAAGTGGAGTGGGAACAGGTGGAATATCTCCGAAGGGGACTCCTTTACGAGCAGGTGACACTACTGGAACATT
AAATATTCCGGGAGCCCCTCTAAATCCTAATTTTTTACCAGGTAATGAAGAAAGGTTAGGAATTTTTAAGGAAAATCGAG
AATTTCTTCCCGGTGGAATCTCCCCTAATTCACGTTGGGCTCAAGATCTTCCTGCTGGACACATTGAAAGAACTCTATTT
TTCATTTACAAACTTCGCTACCGTAAAGGGGAACAAATCGTCATGGCTCTTCGAAGAATCGGAGAAAGCTTGCAGATGAC
AGGATTAGCAAATCTAGATTTGATTGCTTCCATTAACAGTAGCCAATGGATCGAATCTTCTAATTCGCTTATTTTTACTG
GAACCGTTCCTGCTTTAGAACGAATTAAAGAGCTTATTTTAGAAATCGATACTCCTCTACGGCAAGTTTTTATCGAGATG
CTTATTCTTGATACAACTATTACAGATTCTTTAACGTATGGAGTGGACTGGGGATCACGTTTTGGAGGGGGTAACACGGC
AGGTGGTCAGAATTTCCTTGGAACAGGTTCTGGGCTTGTGGGTTCTTTAACGAATGCTATCACAAATAATCCTATTGTGG
ATACCGTTCTAAGTGGGGACGGTTATACAGCCGGTATTATTGGCCGTCATTTAACCCATGGTGGATTGCATTTCAGTACG
ATTGGAGCTTTGGTTAAAGCCATTCATTCGGATACAAAAATTAATATTATCATGAACCCAAAAATCGTAACGGAAGATAA
CAATACCGCCGAGGTTTTTGTGGGTTCGACAGACCGTTATAAAACACAGTCAATTGCTAACGATATCGGATCTGTTATTA
CCAATAATTTCCAATTTATTGATGTGGGTACCACTTTGCGAGTTACTCCATTAATTGGGAATAACGGAATTATCACTCTT
GACATCATTCAAGAAGTAACCAATGATGGGGGTAACGCTAATCCTAATGTCGGGAATAATCCCTCTGTAGTGGACGTTAA
CTTAGTCCCTGTTTTGTCAAAAAGTCGTACAGTTACTAAAGTTCATGTCCCAGACGGATTCTTTGTCATTTTGAGCGGTA
TGATTCAGAGCACCGAGTCTAGATCTGTAAATAGAATCCCCTGTTTAGGAGGGCTTCCTTTAATAGGAGGAATTTCTAAA
CAAAAATCAAATCGCGACAGCAAACGTAATCTCATGATTTTTATTCGTCCTCTTATCGTTGATACAGAAGAAGACCTCGA
GAGTGTTACCAAACGTCAACAAGATGTTTGTATTGAAAAATCTAAATTCAAAAGATCGTGGAATTATGAACTTGATGAAG
CAATGGATTTCTTAAACCTTAAATTGACAGATCCAGATGAAATTGGTCGTACGGTTCGATGA

Upstream 100 bases:

>100_bases
GTTTAGATTCATGAAAAAATTCAATACCTATTATCATTCTTATCTATTTAAATGCTGGCTAGTTGCCTTAGCTTATCAGT
CAGGAATTTCCTCTTCTCTA

Downstream 100 bases:

>100_bases
TAAAAAAGATTTGTAAATATGCCATCCATCTCGCATTGACAGCTCAATTGGCTTTAACATCAAGTTGCCAAATGACAAAT
TGTGAGATGGATCCTATCAT

Product: putative component D of type II secretion pathway

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 953; Mature: 952

Protein sequence:

>953_residues
MASDEKYDEFAKSSSAYVNPSLNQGTGNIKIVKKKSFQNDSLKNIVGVTSNTKTAVGQVSSLHVSSSDELMDDLGHFLAN
DDKLLAQLTNGEQSSSLLNLNIPLDSDHIPLPILTPSQYPKESPISQPSPSQIDLAPSASQPSQSIIDRPQGSVDLPDIT
QPPANPQKINENNPSILTSPRSANSSPAKASTNLETAPQTDVPSNGQGLKEISINFNNVSMIEYIRFISRISNKNFIFDD
EDLQFNVTIVSEEPTSVENLMAALLQELRIRDLLLIEQGNNLIIHRNSRVRAPSRIVFSGTEPTTFETEIVTRVFRLNTL
DPLKASEIIRPLLSEDALIEVLRDSNNLIITDLVTNVNKIAQLISTLDAPNSGVIVGQYVVRNAFVASLADLATKILQPI
AQGNPFVLVPHSSTNSIFIVSNPFIVDKTLAILENLDINEGKTKILDLEKLRIQQEEATRLRYPPGTHPGAPDSSAVPEE
RDTSGVGTGGISPKGTPLRAGDTTGTLNIPGAPLNPNFLPGNEERLGIFKENREFLPGGISPNSRWAQDLPAGHIERTLF
FIYKLRYRKGEQIVMALRRIGESLQMTGLANLDLIASINSSQWIESSNSLIFTGTVPALERIKELILEIDTPLRQVFIEM
LILDTTITDSLTYGVDWGSRFGGGNTAGGQNFLGTGSGLVGSLTNAITNNPIVDTVLSGDGYTAGIIGRHLTHGGLHFST
IGALVKAIHSDTKINIIMNPKIVTEDNNTAEVFVGSTDRYKTQSIANDIGSVITNNFQFIDVGTTLRVTPLIGNNGIITL
DIIQEVTNDGGNANPNVGNNPSVVDVNLVPVLSKSRTVTKVHVPDGFFVILSGMIQSTESRSVNRIPCLGGLPLIGGISK
QKSNRDSKRNLMIFIRPLIVDTEEDLESVTKRQQDVCIEKSKFKRSWNYELDEAMDFLNLKLTDPDEIGRTVR

Sequences:

>Translated_953_residues
MASDEKYDEFAKSSSAYVNPSLNQGTGNIKIVKKKSFQNDSLKNIVGVTSNTKTAVGQVSSLHVSSSDELMDDLGHFLAN
DDKLLAQLTNGEQSSSLLNLNIPLDSDHIPLPILTPSQYPKESPISQPSPSQIDLAPSASQPSQSIIDRPQGSVDLPDIT
QPPANPQKINENNPSILTSPRSANSSPAKASTNLETAPQTDVPSNGQGLKEISINFNNVSMIEYIRFISRISNKNFIFDD
EDLQFNVTIVSEEPTSVENLMAALLQELRIRDLLLIEQGNNLIIHRNSRVRAPSRIVFSGTEPTTFETEIVTRVFRLNTL
DPLKASEIIRPLLSEDALIEVLRDSNNLIITDLVTNVNKIAQLISTLDAPNSGVIVGQYVVRNAFVASLADLATKILQPI
AQGNPFVLVPHSSTNSIFIVSNPFIVDKTLAILENLDINEGKTKILDLEKLRIQQEEATRLRYPPGTHPGAPDSSAVPEE
RDTSGVGTGGISPKGTPLRAGDTTGTLNIPGAPLNPNFLPGNEERLGIFKENREFLPGGISPNSRWAQDLPAGHIERTLF
FIYKLRYRKGEQIVMALRRIGESLQMTGLANLDLIASINSSQWIESSNSLIFTGTVPALERIKELILEIDTPLRQVFIEM
LILDTTITDSLTYGVDWGSRFGGGNTAGGQNFLGTGSGLVGSLTNAITNNPIVDTVLSGDGYTAGIIGRHLTHGGLHFST
IGALVKAIHSDTKINIIMNPKIVTEDNNTAEVFVGSTDRYKTQSIANDIGSVITNNFQFIDVGTTLRVTPLIGNNGIITL
DIIQEVTNDGGNANPNVGNNPSVVDVNLVPVLSKSRTVTKVHVPDGFFVILSGMIQSTESRSVNRIPCLGGLPLIGGISK
QKSNRDSKRNLMIFIRPLIVDTEEDLESVTKRQQDVCIEKSKFKRSWNYELDEAMDFLNLKLTDPDEIGRTVR
>Mature_952_residues
ASDEKYDEFAKSSSAYVNPSLNQGTGNIKIVKKKSFQNDSLKNIVGVTSNTKTAVGQVSSLHVSSSDELMDDLGHFLAND
DKLLAQLTNGEQSSSLLNLNIPLDSDHIPLPILTPSQYPKESPISQPSPSQIDLAPSASQPSQSIIDRPQGSVDLPDITQ
PPANPQKINENNPSILTSPRSANSSPAKASTNLETAPQTDVPSNGQGLKEISINFNNVSMIEYIRFISRISNKNFIFDDE
DLQFNVTIVSEEPTSVENLMAALLQELRIRDLLLIEQGNNLIIHRNSRVRAPSRIVFSGTEPTTFETEIVTRVFRLNTLD
PLKASEIIRPLLSEDALIEVLRDSNNLIITDLVTNVNKIAQLISTLDAPNSGVIVGQYVVRNAFVASLADLATKILQPIA
QGNPFVLVPHSSTNSIFIVSNPFIVDKTLAILENLDINEGKTKILDLEKLRIQQEEATRLRYPPGTHPGAPDSSAVPEER
DTSGVGTGGISPKGTPLRAGDTTGTLNIPGAPLNPNFLPGNEERLGIFKENREFLPGGISPNSRWAQDLPAGHIERTLFF
IYKLRYRKGEQIVMALRRIGESLQMTGLANLDLIASINSSQWIESSNSLIFTGTVPALERIKELILEIDTPLRQVFIEML
ILDTTITDSLTYGVDWGSRFGGGNTAGGQNFLGTGSGLVGSLTNAITNNPIVDTVLSGDGYTAGIIGRHLTHGGLHFSTI
GALVKAIHSDTKINIIMNPKIVTEDNNTAEVFVGSTDRYKTQSIANDIGSVITNNFQFIDVGTTLRVTPLIGNNGIITLD
IIQEVTNDGGNANPNVGNNPSVVDVNLVPVLSKSRTVTKVHVPDGFFVILSGMIQSTESRSVNRIPCLGGLPLIGGISKQ
KSNRDSKRNLMIFIRPLIVDTEEDLESVTKRQQDVCIEKSKFKRSWNYELDEAMDFLNLKLTDPDEIGRTVR

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=375, Percent_Identity=26.6666666666667, Blast_Score=108, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 103747; Mature: 103616

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASDEKYDEFAKSSSAYVNPSLNQGTGNIKIVKKKSFQNDSLKNIVGVTSNTKTAVGQVS
CCCCHHHHHHHCCCCCEECCCCCCCCCCEEEEEECCCCCCCHHHHEECCCCCCHHHCCCE
SLHVSSSDELMDDLGHFLANDDKLLAQLTNGEQSSSLLNLNIPLDSDHIPLPILTPSQYP
EEEECCHHHHHHHHHHHHCCCCCEEHEECCCCCCCCEEEEECCCCCCCCCCEEECCCCCC
KESPISQPSPSQIDLAPSASQPSQSIIDRPQGSVDLPDITQPPANPQKINENNPSILTSP
CCCCCCCCCCCCEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
RSANSSPAKASTNLETAPQTDVPSNGQGLKEISINFNNVSMIEYIRFISRISNKNFIFDD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEECC
EDLQFNVTIVSEEPTSVENLMAALLQELRIRDLLLIEQGNNLIIHRNSRVRAPSRIVFSG
CCCEEEEEEEECCCCCHHHHHHHHHHHHHHCEEEEEECCCEEEEECCCCCCCCCEEEEEC
TEPTTFETEIVTRVFRLNTLDPLKASEIIRPLLSEDALIEVLRDSNNLIITDLVTNVNKI
CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCEEEEHHHHCHHHH
AQLISTLDAPNSGVIVGQYVVRNAFVASLADLATKILQPIAQGNPFVLVPHSSTNSIFIV
HHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEE
SNPFIVDKTLAILENLDINEGKTKILDLEKLRIQQEEATRLRYPPGTHPGAPDSSAVPEE
ECCEEHHHHHHHHHCCCCCCCCEEEEEHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCCCC
RDTSGVGTGGISPKGTPLRAGDTTGTLNIPGAPLNPNFLPGNEERLGIFKENREFLPGGI
CCCCCCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
SPNSRWAQDLPAGHIERTLFFIYKLRYRKGEQIVMALRRIGESLQMTGLANLDLIASINS
CCCCCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHEECCCCCEEEEEECCC
SQWIESSNSLIFTGTVPALERIKELILEIDTPLRQVFIEMLILDTTITDSLTYGVDWGSR
CHHCCCCCCEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCC
FGGGNTAGGQNFLGTGSGLVGSLTNAITNNPIVDTVLSGDGYTAGIIGRHLTHGGLHFST
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCEEEHHHHHHHCCCCCHHHH
IGALVKAIHSDTKINIIMNPKIVTEDNNTAEVFVGSTDRYKTQSIANDIGSVITNNFQFI
HHHHHHHHCCCCEEEEEECCEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCEEEE
DVGTTLRVTPLIGNNGIITLDIIQEVTNDGGNANPNVGNNPSVVDVNLVPVLSKSRTVTK
EECCEEEEEEEECCCCEEEEHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEE
VHVPDGFFVILSGMIQSTESRSVNRIPCLGGLPLIGGISKQKSNRDSKRNLMIFIRPLIV
EECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEEEEEEEE
DTEEDLESVTKRQQDVCIEKSKFKRSWNYELDEAMDFLNLKLTDPDEIGRTVR
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEECCHHHCCCCCC
>Mature Secondary Structure 
ASDEKYDEFAKSSSAYVNPSLNQGTGNIKIVKKKSFQNDSLKNIVGVTSNTKTAVGQVS
CCCHHHHHHHCCCCCEECCCCCCCCCCEEEEEECCCCCCCHHHHEECCCCCCHHHCCCE
SLHVSSSDELMDDLGHFLANDDKLLAQLTNGEQSSSLLNLNIPLDSDHIPLPILTPSQYP
EEEECCHHHHHHHHHHHHCCCCCEEHEECCCCCCCCEEEEECCCCCCCCCCEEECCCCCC
KESPISQPSPSQIDLAPSASQPSQSIIDRPQGSVDLPDITQPPANPQKINENNPSILTSP
CCCCCCCCCCCCEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
RSANSSPAKASTNLETAPQTDVPSNGQGLKEISINFNNVSMIEYIRFISRISNKNFIFDD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEECC
EDLQFNVTIVSEEPTSVENLMAALLQELRIRDLLLIEQGNNLIIHRNSRVRAPSRIVFSG
CCCEEEEEEEECCCCCHHHHHHHHHHHHHHCEEEEEECCCEEEEECCCCCCCCCEEEEEC
TEPTTFETEIVTRVFRLNTLDPLKASEIIRPLLSEDALIEVLRDSNNLIITDLVTNVNKI
CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCEEEEHHHHCHHHH
AQLISTLDAPNSGVIVGQYVVRNAFVASLADLATKILQPIAQGNPFVLVPHSSTNSIFIV
HHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEE
SNPFIVDKTLAILENLDINEGKTKILDLEKLRIQQEEATRLRYPPGTHPGAPDSSAVPEE
ECCEEHHHHHHHHHCCCCCCCCEEEEEHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCCCC
RDTSGVGTGGISPKGTPLRAGDTTGTLNIPGAPLNPNFLPGNEERLGIFKENREFLPGGI
CCCCCCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
SPNSRWAQDLPAGHIERTLFFIYKLRYRKGEQIVMALRRIGESLQMTGLANLDLIASINS
CCCCCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHEECCCCCEEEEEECCC
SQWIESSNSLIFTGTVPALERIKELILEIDTPLRQVFIEMLILDTTITDSLTYGVDWGSR
CHHCCCCCCEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCC
FGGGNTAGGQNFLGTGSGLVGSLTNAITNNPIVDTVLSGDGYTAGIIGRHLTHGGLHFST
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCEEEHHHHHHHCCCCCHHHH
IGALVKAIHSDTKINIIMNPKIVTEDNNTAEVFVGSTDRYKTQSIANDIGSVITNNFQFI
HHHHHHHHCCCCEEEEEECCEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCEEEE
DVGTTLRVTPLIGNNGIITLDIIQEVTNDGGNANPNVGNNPSVVDVNLVPVLSKSRTVTK
EECCEEEEEEEECCCCEEEEHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEE
VHVPDGFFVILSGMIQSTESRSVNRIPCLGGLPLIGGISKQKSNRDSKRNLMIFIRPLIV
EECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEEEEEEEE
DTEEDLESVTKRQQDVCIEKSKFKRSWNYELDEAMDFLNLKLTDPDEIGRTVR
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEECCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1640836 [H]