| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446994
Identifier: 46446994
GI number: 46446994
Start: 1623980
End: 1626811
Strand: Direct
Name: 46446994
Synonym: pc1360
Alternate gene names: NA
Gene position: 1623980-1626811 (Clockwise)
Preceding gene: 46446993
Following gene: 46446995
Centisome position: 67.26
GC content: 34.57
Gene sequence:
>2832_bases ATGACAATTTTGCCTTTTAATTCAGATAACTATGATAGAAATTTTGAGTTATTCTCTTCTCGTGATCCATTGGCAGCTTA TCAACTAGAAGGGATTTTACAACAAGAGGAATTTACACCTTGTAAAACCACTAAAGGGGAGCCTAATTTATTTAAAAGAA AATTTGGAATAGATGATTATTTGCATGCGCAAACAGGAGCATTAGAAGAAGCGTCTACCTCAATTTCACCCGAGCTTTTA GAAAAAGGAGAAATTCTATATATTTATGGATTAGGACTAGGATATTTCTATGAGGTATTACAGCCCTGGCTTTTGCAAAA TCCCCAAAGACATGTGATCTTTTTAGAAGATAATCTTGAAATCATTTACTATTTTTTATTCACTAACACTGCCTCTTCGT TACTTCAAAATTCTCAAGTTACTCTTTTTTATTTTCGTAACTATCAATCAGACTATGAAAGCTTCTGTAAACTTAACAGT GCTTTTATCAATAGACCTATTGAATTTCTGACACTTCCTTACTATGCATTACGTAAAGAAATGGAAGCTTTAGCTTTGTG CTATGTTATCCTACATGACCATAAGATTTTAGAAGCTTTACACAATGAATATTTATCTGGTCAAAAGGGGTTTTTAACAA ATTTTTACCAAAATATTTTTCATCTTCCCCAATCTCATTTTGCCACAAATCTTTTTGATCGATTTAAAAATATCCCAGCT ATCATTTGTGGAGCTGGACCCTCTCTAGAAAAAAACATTCATAAACTCAAAGATCTAGGACAAAATGCATTAATTTTTGC GGGGGGTTCCTCTTTAAATGTGCTCAACCATGCAGGCATACAACCACATTTTGGTTTAGGATTAGATCCAAACCCTGAAC AAACCCATCGTTTATTAACTAACCATACTTTTCACATTCCTTTTCTTTATCGTTTACGAATTTCACATGCTGCTTTTCAG CTCATGCAAGGGCCTAAAATCTATGTTTCAGGATCAACAAATCAACTGGCATCTTGGTTTGAAAAAGAGTTAGATATCGC AGGACCACAATTAGATGAAGGACACAATGTCGTTAATCTATGCACAGAAATTGCTCATAAGATGGGCTGTAACCCTATTA TTTATGTTGGAATGGACCTTGCATACACCGAAATACAACCCTATGCAAAAGGTATTTCTACTCATCCCCTCTGGATCGAT ATCAGCCAACCTTATCAAACAGGTGATCAAAAAGCTGTATTAAGAACTGATATTTTTAATCAGTGGATTAAAACTAAATG GGAATGGATAGCAGAAGCTAATTGGTTAGGCCAATTTGCAAAACATCACTCTGATATACAAATGATTAACGCGACTGAAG GCGGCTTAGGTTTTCCTTCAGTTCCTAATCTTTCTCTAGAGGAAGTTTCCAACCTGTATTTGGCTAAAACTTATGATATT TCAAATTGGGTTCATGCCGAAATCCAAAACCAACCACCCAAAATCACTAAACCCGCTCTTTTAAACTTAATCAATCAACT CAAAAATAGTTTAGACAGATGTTTAGAAGCTTATCGTTCAACAATAAAAACTAAACAAACGGTTCAAATTTTTGCTTCTT CGACTACCAATTTTTTTGATACACAAACGATTATAACAGATAGCAGCATCAAAACAGAAATTGGATATCGACACTTCTTA GATATGTTTGACATGGCTTATCAATATCTCCAAAAATCACATCAGCTGATTCACGCCAAAAAAAGTAATGAGTTTCAAGA AACCTTAGAACGTTTTTGTTTTTTAGAAGAGGTACTCTCGCAGAACATCCAGTTAATGAACGAAGGAATTCAAAAGTTTA TTTTTTCTCCTCCCCCGATTGCACTTACTTATCAAAAAAGAGCTTTTTCTCATTCAATGGGGGAAATATACCGATTCGAA GATGGCCGTTTGGAAATTCAAGATCCTGAATTAGGCATTTGTATTCAAGAAACGTTTCATCCGAATCTAAACACAGATCG CCTCGCGGCTTTTTTCCCAAATGGTCAATTGCAATATGAAATGTTTTATGATCAGCAATTGCTTCACGGACCTTCTCGTT TCTATCAAGAAAATGGCCAGTTATTAGCTGAAAGCTGGTTTATCAAAGGAAAACGGGTAGGAAAAACAATTCAATACTTT AATCAAGGCAATCTTTATAGCGTTGGCCGCTATAAAGAAGGATTACTGCATGGAAAACAAGAGTATTTTTATGCTAATGG ATCTCCTCACATTGTGACTCACTATTTCAATGGATTATTAAATGGAGAAGTTTTTGTTTATACACAAGATAGCAAAATCA TTAGAGAATTGCATTACCTAAGCGGAAAACGGCATGGTGTTGAAAAGATGTGGGATCAAACTGGTCAACAAATTTTAGAA TGTCATTATCAAGAAGGAGTCCCTACTGGCAAAGCGATCCAATGGAACCTCAAAGGAGAAAAAAGGAAAGAAGTGATGAT TTATCATTTCCCTAATGATTTCGATCTAAAGATTTGGGATGAACAGGGACAATGTATCAAATCCTATGAACGTGGCATCG AAAATTTCTCTTATATCTACGAACAAACACAAAAAAAAGCCGATAATTTAGAAGAGACACTAAAAAATATACTTCAACAA ATGGATCCTATTGTTGAACAACATTTAACTCAATCTAAAGATGTCGATTTAAAACTAGCAGAAGATTTTGCCGGACTAAA AGACGCTTTAAAAGGAATGCAAAATCTCAAAGAATTACTCACAGAAACCATGAAAGAGAATCTCAAACATGCTGAAGAAC TTAAGAAAAATAAAGAGAAGAAACCTTCATGA
Upstream 100 bases:
>100_bases AAAATGGCCAACTATTTACAGAAGTGATATATCATCAGAATTTACCTAAACAGGCCAGATGTTGGTTTCCAGACGGAACG ATTGCAAAGGACGTGATCTT
Downstream 100 bases:
>100_bases ATGATAAAAGGTTTGAAGATAACTTAGAACGGTTACAAAAAAAAGACGCCAAACTTGCTTATCAACTACTGACAGCACAG GCAGATGATCTCTTATTTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 943; Mature: 942
Protein sequence:
>943_residues MTILPFNSDNYDRNFELFSSRDPLAAYQLEGILQQEEFTPCKTTKGEPNLFKRKFGIDDYLHAQTGALEEASTSISPELL EKGEILYIYGLGLGYFYEVLQPWLLQNPQRHVIFLEDNLEIIYYFLFTNTASSLLQNSQVTLFYFRNYQSDYESFCKLNS AFINRPIEFLTLPYYALRKEMEALALCYVILHDHKILEALHNEYLSGQKGFLTNFYQNIFHLPQSHFATNLFDRFKNIPA IICGAGPSLEKNIHKLKDLGQNALIFAGGSSLNVLNHAGIQPHFGLGLDPNPEQTHRLLTNHTFHIPFLYRLRISHAAFQ LMQGPKIYVSGSTNQLASWFEKELDIAGPQLDEGHNVVNLCTEIAHKMGCNPIIYVGMDLAYTEIQPYAKGISTHPLWID ISQPYQTGDQKAVLRTDIFNQWIKTKWEWIAEANWLGQFAKHHSDIQMINATEGGLGFPSVPNLSLEEVSNLYLAKTYDI SNWVHAEIQNQPPKITKPALLNLINQLKNSLDRCLEAYRSTIKTKQTVQIFASSTTNFFDTQTIITDSSIKTEIGYRHFL DMFDMAYQYLQKSHQLIHAKKSNEFQETLERFCFLEEVLSQNIQLMNEGIQKFIFSPPPIALTYQKRAFSHSMGEIYRFE DGRLEIQDPELGICIQETFHPNLNTDRLAAFFPNGQLQYEMFYDQQLLHGPSRFYQENGQLLAESWFIKGKRVGKTIQYF NQGNLYSVGRYKEGLLHGKQEYFYANGSPHIVTHYFNGLLNGEVFVYTQDSKIIRELHYLSGKRHGVEKMWDQTGQQILE CHYQEGVPTGKAIQWNLKGEKRKEVMIYHFPNDFDLKIWDEQGQCIKSYERGIENFSYIYEQTQKKADNLEETLKNILQQ MDPIVEQHLTQSKDVDLKLAEDFAGLKDALKGMQNLKELLTETMKENLKHAEELKKNKEKKPS
Sequences:
>Translated_943_residues MTILPFNSDNYDRNFELFSSRDPLAAYQLEGILQQEEFTPCKTTKGEPNLFKRKFGIDDYLHAQTGALEEASTSISPELL EKGEILYIYGLGLGYFYEVLQPWLLQNPQRHVIFLEDNLEIIYYFLFTNTASSLLQNSQVTLFYFRNYQSDYESFCKLNS AFINRPIEFLTLPYYALRKEMEALALCYVILHDHKILEALHNEYLSGQKGFLTNFYQNIFHLPQSHFATNLFDRFKNIPA IICGAGPSLEKNIHKLKDLGQNALIFAGGSSLNVLNHAGIQPHFGLGLDPNPEQTHRLLTNHTFHIPFLYRLRISHAAFQ LMQGPKIYVSGSTNQLASWFEKELDIAGPQLDEGHNVVNLCTEIAHKMGCNPIIYVGMDLAYTEIQPYAKGISTHPLWID ISQPYQTGDQKAVLRTDIFNQWIKTKWEWIAEANWLGQFAKHHSDIQMINATEGGLGFPSVPNLSLEEVSNLYLAKTYDI SNWVHAEIQNQPPKITKPALLNLINQLKNSLDRCLEAYRSTIKTKQTVQIFASSTTNFFDTQTIITDSSIKTEIGYRHFL DMFDMAYQYLQKSHQLIHAKKSNEFQETLERFCFLEEVLSQNIQLMNEGIQKFIFSPPPIALTYQKRAFSHSMGEIYRFE DGRLEIQDPELGICIQETFHPNLNTDRLAAFFPNGQLQYEMFYDQQLLHGPSRFYQENGQLLAESWFIKGKRVGKTIQYF NQGNLYSVGRYKEGLLHGKQEYFYANGSPHIVTHYFNGLLNGEVFVYTQDSKIIRELHYLSGKRHGVEKMWDQTGQQILE CHYQEGVPTGKAIQWNLKGEKRKEVMIYHFPNDFDLKIWDEQGQCIKSYERGIENFSYIYEQTQKKADNLEETLKNILQQ MDPIVEQHLTQSKDVDLKLAEDFAGLKDALKGMQNLKELLTETMKENLKHAEELKKNKEKKPS >Mature_942_residues TILPFNSDNYDRNFELFSSRDPLAAYQLEGILQQEEFTPCKTTKGEPNLFKRKFGIDDYLHAQTGALEEASTSISPELLE KGEILYIYGLGLGYFYEVLQPWLLQNPQRHVIFLEDNLEIIYYFLFTNTASSLLQNSQVTLFYFRNYQSDYESFCKLNSA FINRPIEFLTLPYYALRKEMEALALCYVILHDHKILEALHNEYLSGQKGFLTNFYQNIFHLPQSHFATNLFDRFKNIPAI ICGAGPSLEKNIHKLKDLGQNALIFAGGSSLNVLNHAGIQPHFGLGLDPNPEQTHRLLTNHTFHIPFLYRLRISHAAFQL MQGPKIYVSGSTNQLASWFEKELDIAGPQLDEGHNVVNLCTEIAHKMGCNPIIYVGMDLAYTEIQPYAKGISTHPLWIDI SQPYQTGDQKAVLRTDIFNQWIKTKWEWIAEANWLGQFAKHHSDIQMINATEGGLGFPSVPNLSLEEVSNLYLAKTYDIS NWVHAEIQNQPPKITKPALLNLINQLKNSLDRCLEAYRSTIKTKQTVQIFASSTTNFFDTQTIITDSSIKTEIGYRHFLD MFDMAYQYLQKSHQLIHAKKSNEFQETLERFCFLEEVLSQNIQLMNEGIQKFIFSPPPIALTYQKRAFSHSMGEIYRFED GRLEIQDPELGICIQETFHPNLNTDRLAAFFPNGQLQYEMFYDQQLLHGPSRFYQENGQLLAESWFIKGKRVGKTIQYFN QGNLYSVGRYKEGLLHGKQEYFYANGSPHIVTHYFNGLLNGEVFVYTQDSKIIRELHYLSGKRHGVEKMWDQTGQQILEC HYQEGVPTGKAIQWNLKGEKRKEVMIYHFPNDFDLKIWDEQGQCIKSYERGIENFSYIYEQTQKKADNLEETLKNILQQM DPIVEQHLTQSKDVDLKLAEDFAGLKDALKGMQNLKELLTETMKENLKHAEELKKNKEKKPS
Specific function: Unknown
COG id: COG2604
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 109159; Mature: 109028
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTILPFNSDNYDRNFELFSSRDPLAAYQLEGILQQEEFTPCKTTKGEPNLFKRKFGIDDY CEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCHH LHAQTGALEEASTSISPELLEKGEILYIYGLGLGYFYEVLQPWLLQNPQRHVIFLEDNLE HHHCCCCHHHHHCCCCHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCE IIYYFLFTNTASSLLQNSQVTLFYFRNYQSDYESFCKLNSAFINRPIEFLTLPYYALRKE EEEEEEHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHH MEALALCYVILHDHKILEALHNEYLSGQKGFLTNFYQNIFHLPQSHFATNLFDRFKNIPA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCE IICGAGPSLEKNIHKLKDLGQNALIFAGGSSLNVLNHAGIQPHFGLGLDPNPEQTHRLLT EEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHH NHTFHIPFLYRLRISHAAFQLMQGPKIYVSGSTNQLASWFEKELDIAGPQLDEGHNVVNL CCEEECCCCEEHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHH CTEIAHKMGCNPIIYVGMDLAYTEIQPYAKGISTHPLWIDISQPYQTGDQKAVLRTDIFN HHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHH QWIKTKWEWIAEANWLGQFAKHHSDIQMINATEGGLGFPSVPNLSLEEVSNLYLAKTYDI HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHCCEEEEEEECC SNWVHAEIQNQPPKITKPALLNLINQLKNSLDRCLEAYRSTIKTKQTVQIFASSTTNFFD CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEECCCCCCCC TQTIITDSSIKTEIGYRHFLDMFDMAYQYLQKSHQLIHAKKSNEFQETLERFCFLEEVLS CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH QNIQLMNEGIQKFIFSPPPIALTYQKRAFSHSMGEIYRFEDGRLEIQDPELGICIQETFH HHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHCHHCEEEECCCEEEEECCCCCEEEEECCC PNLNTDRLAAFFPNGQLQYEMFYDQQLLHGPSRFYQENGQLLAESWFIKGKRVGKTIQYF CCCCCCCEEEECCCCCEEEEEEHHHHHHHCHHHHHHCCCCEEEHHHHHCCHHHHHHHHHH NQGNLYSVGRYKEGLLHGKQEYFYANGSPHIVTHYFNGLLNGEVFVYTQDSKIIRELHYL CCCCEEECCCHHHHHHCCCCCEEEECCCCCEEHHHHCCCCCCEEEEEECCHHHHHHHHHH SGKRHGVEKMWDQTGQQILECHYQEGVPTGKAIQWNLKGEKRKEVMIYHFPNDFDLKIWD CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEC EQGQCIKSYERGIENFSYIYEQTQKKADNLEETLKNILQQMDPIVEQHLTQSKDVDLKLA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEH EDFAGLKDALKGMQNLKELLTETMKENLKHAEELKKNKEKKPS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure TILPFNSDNYDRNFELFSSRDPLAAYQLEGILQQEEFTPCKTTKGEPNLFKRKFGIDDY EEECCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCHH LHAQTGALEEASTSISPELLEKGEILYIYGLGLGYFYEVLQPWLLQNPQRHVIFLEDNLE HHHCCCCHHHHHCCCCHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCE IIYYFLFTNTASSLLQNSQVTLFYFRNYQSDYESFCKLNSAFINRPIEFLTLPYYALRKE EEEEEEHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHH MEALALCYVILHDHKILEALHNEYLSGQKGFLTNFYQNIFHLPQSHFATNLFDRFKNIPA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCE IICGAGPSLEKNIHKLKDLGQNALIFAGGSSLNVLNHAGIQPHFGLGLDPNPEQTHRLLT EEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHH NHTFHIPFLYRLRISHAAFQLMQGPKIYVSGSTNQLASWFEKELDIAGPQLDEGHNVVNL CCEEECCCCEEHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHH CTEIAHKMGCNPIIYVGMDLAYTEIQPYAKGISTHPLWIDISQPYQTGDQKAVLRTDIFN HHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHH QWIKTKWEWIAEANWLGQFAKHHSDIQMINATEGGLGFPSVPNLSLEEVSNLYLAKTYDI HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHCCEEEEEEECC SNWVHAEIQNQPPKITKPALLNLINQLKNSLDRCLEAYRSTIKTKQTVQIFASSTTNFFD CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEECCCCCCCC TQTIITDSSIKTEIGYRHFLDMFDMAYQYLQKSHQLIHAKKSNEFQETLERFCFLEEVLS CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH QNIQLMNEGIQKFIFSPPPIALTYQKRAFSHSMGEIYRFEDGRLEIQDPELGICIQETFH HHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHCHHCEEEECCCEEEEECCCCCEEEEECCC PNLNTDRLAAFFPNGQLQYEMFYDQQLLHGPSRFYQENGQLLAESWFIKGKRVGKTIQYF CCCCCCCEEEECCCCCEEEEEEHHHHHHHCHHHHHHCCCCEEEHHHHHCCHHHHHHHHHH NQGNLYSVGRYKEGLLHGKQEYFYANGSPHIVTHYFNGLLNGEVFVYTQDSKIIRELHYL CCCCEEECCCHHHHHHCCCCCEEEECCCCCEEHHHHCCCCCCEEEEEECCHHHHHHHHHH SGKRHGVEKMWDQTGQQILECHYQEGVPTGKAIQWNLKGEKRKEVMIYHFPNDFDLKIWD CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEC EQGQCIKSYERGIENFSYIYEQTQKKADNLEETLKNILQQMDPIVEQHLTQSKDVDLKLA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEH EDFAGLKDALKGMQNLKELLTETMKENLKHAEELKKNKEKKPS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA