| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446934
Identifier: 46446934
GI number: 46446934
Start: 1556564
End: 1557079
Strand: Direct
Name: 46446934
Synonym: pc1300
Alternate gene names: NA
Gene position: 1556564-1557079 (Clockwise)
Preceding gene: 46446933
Following gene: 46446936
Centisome position: 64.47
GC content: 34.69
Gene sequence:
>516_bases TTGGCTGAAAGTTTAGAACGATTTTATTTGCCAATGGATCTTGTCGCTGTCCCTACACAAGGAAGCTGGCAAGCTAATAC GCAATATAAGGCTTACTTTATTAAACAAATGCTTGTTCGCCATTATCCTAAAAATATTTTATACTTAGATGCAGATGCAA GAGTTCAACAGTATCCCGCCCTATTTGATCAAATAGATGCAGATTTAGCCGTTTTTTATTGGCATAACAAAGAACTGATT AGTAGTACGCTCTACTTTGCTAATAATGCTAAAATTGCCGAGTTAATAGAAAGATGGATCACTTGTTGTTTTGAAAACCC TGATATTTGGGATCAAAAAGTTTTACAATATGTCATTCAAGAATCAAAAGATCTTAACCTGAGAATTGACATGCTTCCCC CCTCTTATTGTCAAATTTTTGATTTGATGCAACAAGAAGGAGAACCAGTCATTGAACAATTTCAAGCAAGCCGCCGTTTT AAAACTCAAATAGATTCTTCAAAGAATGAAGCTTAA
Upstream 100 bases:
>100_bases ATGTACAAACATTTGTTTCTAACCTTTTTGATTAAATATGGCATATATTACTGTTGGTTATTTTACAGAAAACACTCCTT ACGAAGAAGAAATTCGTCAT
Downstream 100 bases:
>100_bases AAGGCGACATATGTTGGATTAGAGCTTTTCGTTAATCCTAGATTAAATGTATTTGTCCAAGTTTTAAAATGATCCGCATA AGTTTGATCAATGCATCCTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 171; Mature: 170
Protein sequence:
>171_residues MAESLERFYLPMDLVAVPTQGSWQANTQYKAYFIKQMLVRHYPKNILYLDADARVQQYPALFDQIDADLAVFYWHNKELI SSTLYFANNAKIAELIERWITCCFENPDIWDQKVLQYVIQESKDLNLRIDMLPPSYCQIFDLMQQEGEPVIEQFQASRRF KTQIDSSKNEA
Sequences:
>Translated_171_residues MAESLERFYLPMDLVAVPTQGSWQANTQYKAYFIKQMLVRHYPKNILYLDADARVQQYPALFDQIDADLAVFYWHNKELI SSTLYFANNAKIAELIERWITCCFENPDIWDQKVLQYVIQESKDLNLRIDMLPPSYCQIFDLMQQEGEPVIEQFQASRRF KTQIDSSKNEA >Mature_170_residues AESLERFYLPMDLVAVPTQGSWQANTQYKAYFIKQMLVRHYPKNILYLDADARVQQYPALFDQIDADLAVFYWHNKELIS STLYFANNAKIAELIERWITCCFENPDIWDQKVLQYVIQESKDLNLRIDMLPPSYCQIFDLMQQEGEPVIEQFQASRRFK TQIDSSKNEA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20220; Mature: 20089
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAESLERFYLPMDLVAVPTQGSWQANTQYKAYFIKQMLVRHYPKNILYLDADARVQQYPA CCCCHHHHCCCHHEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH LFDQIDADLAVFYWHNKELISSTLYFANNAKIAELIERWITCCFENPDIWDQKVLQYVIQ HHHHHCCCEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH ESKDLNLRIDMLPPSYCQIFDLMQQEGEPVIEQFQASRRFKTQIDSSKNEA CCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure AESLERFYLPMDLVAVPTQGSWQANTQYKAYFIKQMLVRHYPKNILYLDADARVQQYPA CCCHHHHCCCHHEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH LFDQIDADLAVFYWHNKELISSTLYFANNAKIAELIERWITCCFENPDIWDQKVLQYVIQ HHHHHCCCEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH ESKDLNLRIDMLPPSYCQIFDLMQQEGEPVIEQFQASRRFKTQIDSSKNEA CCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA