| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
Click here to switch to the map view.
The map label for this gene is dps [C]
Identifier: 46446783
GI number: 46446783
Start: 1378476
End: 1378940
Strand: Direct
Name: dps [C]
Synonym: pc1149
Alternate gene names: 46446783
Gene position: 1378476-1378940 (Clockwise)
Preceding gene: 46446782
Following gene: 46446784
Centisome position: 57.09
GC content: 35.27
Gene sequence:
>465_bases ATGACTATTAATCTCAATTTAGATCAAAGTGTCAGACAGCAAATTGCTCAGTTTTTAAGTTTGATATTGTCTGATACCTA TGTGTTATATGTAAAAACTCAAAATTTTCATTGGAACCTTATCGATTCTCGTTTTTATGCTTTGCATAATTTTTTAGAAA AGCAATATAAAGAACTTGCTGAAGCAACAGATGAGCTTGCCGAACGCATTCGTATGCTAGGTGAACAGGCACCTGGGAGT TTGAAACAATTTTTAGAAATGACCTCATTAAAAGAATCTGATGGAGATTTGGGTGGAGATGATATGCTCCAAAAGCTTTT AAAAGACCACGAGTCTATTTGCGGTCACTTAAGAGAAAGAATTGATCAATCTTCTGAACTTGGCGATGAAGGAACAGCTG ATTTATTAATTCAACGCTTAAGGGCTCATGAAAAAGCTGCTTGGATGCTGCGTAGTCATTTTTAA
Upstream 100 bases:
>100_bases TTGTTTTGAATATTTTTACTAATTATTTTAATCATATTACAGATCCTCAAATTGATTTTCCTTTTGCTCCAAAAATTAAT TAAACAAATAAGGAGTATTT
Downstream 100 bases:
>100_bases ATTTTATGCGTAATGCCAAATAGCTGAAATGATGAAAGCAATCGCTCTAGAAAAGTATAGAGAATCAAACGAATTAGCAA TTAAGGGATTTTCCCAACCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 154; Mature: 153
Protein sequence:
>154_residues MTINLNLDQSVRQQIAQFLSLILSDTYVLYVKTQNFHWNLIDSRFYALHNFLEKQYKELAEATDELAERIRMLGEQAPGS LKQFLEMTSLKESDGDLGGDDMLQKLLKDHESICGHLRERIDQSSELGDEGTADLLIQRLRAHEKAAWMLRSHF
Sequences:
>Translated_154_residues MTINLNLDQSVRQQIAQFLSLILSDTYVLYVKTQNFHWNLIDSRFYALHNFLEKQYKELAEATDELAERIRMLGEQAPGS LKQFLEMTSLKESDGDLGGDDMLQKLLKDHESICGHLRERIDQSSELGDEGTADLLIQRLRAHEKAAWMLRSHF >Mature_153_residues TINLNLDQSVRQQIAQFLSLILSDTYVLYVKTQNFHWNLIDSRFYALHNFLEKQYKELAEATDELAERIRMLGEQAPGSL KQFLEMTSLKESDGDLGGDDMLQKLLKDHESICGHLRERIDQSSELGDEGTADLLIQRLRAHEKAAWMLRSHF
Specific function: Unspecifically Binds And Protects DNA From Oxidative Damage Mediated By Hydrogen Peroxide. Iron-Storage Protein. [C]
COG id: COG0783
COG function: function code P; DNA-binding ferritin-like protein (oxidative damage protectant)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dps family [H]
Homologues:
None
Paralogues:
None
Copy number: 6720 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002177 - InterPro: IPR023188 - InterPro: IPR012347 - InterPro: IPR009078 - InterPro: IPR008331 [H]
Pfam domain/function: PF00210 Ferritin [H]
EC number: NA
Molecular weight: Translated: 17839; Mature: 17708
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTINLNLDQSVRQQIAQFLSLILSDTYVLYVKTQNFHWNLIDSRFYALHNFLEKQYKELA CEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHH EATDELAERIRMLGEQAPGSLKQFLEMTSLKESDGDLGGDDMLQKLLKDHESICGHLRER HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH IDQSSELGDEGTADLLIQRLRAHEKAAWMLRSHF HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TINLNLDQSVRQQIAQFLSLILSDTYVLYVKTQNFHWNLIDSRFYALHNFLEKQYKELA EEECCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHH EATDELAERIRMLGEQAPGSLKQFLEMTSLKESDGDLGGDDMLQKLLKDHESICGHLRER HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH IDQSSELGDEGTADLLIQRLRAHEKAAWMLRSHF HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]