| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446782
Identifier: 46446782
GI number: 46446782
Start: 1377919
End: 1378458
Strand: Direct
Name: 46446782
Synonym: pc1148
Alternate gene names: NA
Gene position: 1377919-1378458 (Clockwise)
Preceding gene: 46446781
Following gene: 46446783
Centisome position: 57.07
GC content: 32.78
Gene sequence:
>540_bases ATGACTCGAATCAGCCCTATTACAAAAGAAGAAGCTAATCAAAACATTACCCAAATTTACAGTGGTTTAGAAAAAAAAAT GGGTCGCGTTCTGAATATTTTCCAAAATATGGGAAATTCTGAAGCAGCCTTAAAAGGGTATTTAGGATTAAGTGAAGCAG CATCTCAGACAAGCTTAAGTCCTAAACTACGAGAACAACTTGCTTTAGTGGTAGGTCAAACAAATGATTGTCAATATTGC TTATCAGCACATACTGTGAGTGCTAAATTAGCCGGTCTACAAGAGAAAGATATTTTAGAATCACGACTAGGGCATTCTCA AGATAAAAAAACAGAAGCCATTTTAACTTTTGCCAAAACTATTGTGGAAAGACGAGCTCAAGTTTCAGATCAAGATATAG AGAAACTAAAATCCGCTGGCATTTCAGATCAAGAAATTGTGGAAATTATTCTAGTTGTTGTTTTGAATATTTTTACTAAT TATTTTAATCATATTACAGATCCTCAAATTGATTTTCCTTTTGCTCCAAAAATTAATTAA
Upstream 100 bases:
>100_bases GGTTTTTTCAGCCGCGGAATTAATGATGAAGCAGAATTAGAATCTACTCAATAATTGTATTTTTTAAACATGTCCATCTA TTTTTAATCAGAGGTATAAA
Downstream 100 bases:
>100_bases ACAAATAAGGAGTATTTATGACTATTAATCTCAATTTAGATCAAAGTGTCAGACAGCAAATTGCTCAGTTTTTAAGTTTG ATATTGTCTGATACCTATGT
Product: hypothetical protein
Products: NA
Alternate protein names: Alkylhydroperoxidase Like Protein AhpD Family; Alkylhydroperoxidase AhpD Core; Carboxymuconolactone Decarboxylase; Peroxidase-Related; Alkylhydroperoxidase AhpD Family Core Domain Protein; Carboxymuconolactone Decarboxylase Family Protein; Alkylhydroperoxidase-Like Protein AhpD Family; Alpha/Beta Hydrolase; 24 KDa Macrophage-Induced Protein; Carboxymuconolactone Decarboxylase Family; 4-Carboxymuconolactone Decarboxylase; Alkylhydroperoxidase-Like Protein; Mip Protein; MIP-(Macrophage Infectivity Potentiator)-Like Protein; AhpD-Like Alkylhydroperoxidase; Alkylhydroperoxidase AhpD; Macrophage Infectivity Potentiator-Related Protein; Antioxydant Protein; Peroxidase; Peroxidase-Like Protein; Alkylhydroperoxidase Like Protein AhpD Family Protein
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MTRISPITKEEANQNITQIYSGLEKKMGRVLNIFQNMGNSEAALKGYLGLSEAASQTSLSPKLREQLALVVGQTNDCQYC LSAHTVSAKLAGLQEKDILESRLGHSQDKKTEAILTFAKTIVERRAQVSDQDIEKLKSAGISDQEIVEIILVVVLNIFTN YFNHITDPQIDFPFAPKIN
Sequences:
>Translated_179_residues MTRISPITKEEANQNITQIYSGLEKKMGRVLNIFQNMGNSEAALKGYLGLSEAASQTSLSPKLREQLALVVGQTNDCQYC LSAHTVSAKLAGLQEKDILESRLGHSQDKKTEAILTFAKTIVERRAQVSDQDIEKLKSAGISDQEIVEIILVVVLNIFTN YFNHITDPQIDFPFAPKIN >Mature_178_residues TRISPITKEEANQNITQIYSGLEKKMGRVLNIFQNMGNSEAALKGYLGLSEAASQTSLSPKLREQLALVVGQTNDCQYCL SAHTVSAKLAGLQEKDILESRLGHSQDKKTEAILTFAKTIVERRAQVSDQDIEKLKSAGISDQEIVEIILVVVLNIFTNY FNHITDPQIDFPFAPKIN
Specific function: Unknown
COG id: COG2128
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19852; Mature: 19721
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRISPITKEEANQNITQIYSGLEKKMGRVLNIFQNMGNSEAALKGYLGLSEAASQTSLS CCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC PKLREQLALVVGQTNDCQYCLSAHTVSAKLAGLQEKDILESRLGHSQDKKTEAILTFAKT HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHH IVERRAQVSDQDIEKLKSAGISDQEIVEIILVVVLNIFTNYFNHITDPQIDFPFAPKIN HHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure TRISPITKEEANQNITQIYSGLEKKMGRVLNIFQNMGNSEAALKGYLGLSEAASQTSLS CCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC PKLREQLALVVGQTNDCQYCLSAHTVSAKLAGLQEKDILESRLGHSQDKKTEAILTFAKT HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHH IVERRAQVSDQDIEKLKSAGISDQEIVEIILVVVLNIFTNYFNHITDPQIDFPFAPKIN HHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA