| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446776
Identifier: 46446776
GI number: 46446776
Start: 1372384
End: 1374156
Strand: Direct
Name: 46446776
Synonym: pc1142
Alternate gene names: NA
Gene position: 1372384-1374156 (Clockwise)
Preceding gene: 46446775
Following gene: 46446778
Centisome position: 56.84
GC content: 38.69
Gene sequence:
>1773_bases TTGAATATTTCTAATTTTGGGTTTAACCCTAGTCTTCTTGCCAATACAGCGATTCCATCTTACTATCCCCCTCAAGACAT TAATGATCAACTTGAGAATGAAAATACTCCCTTAGACAATCCTTTACCTAATCTAGAAGAAACTAATGCACCAACGATTC CAACTCCTGCTCTTTCACCTTCATCTGAACAAGTTCAACTAAGCTTTCAAGAGGGAACTTCTCTAACTATTTCTCATTCT CAGCTAGCTTTGTTAAAGGAAAAATCACACTACTTTAACAATCTGTGGTCGGGGCAATTTCAAGAAACCCTGCAACATCC TTTGGCTTTGACACAAAAAGACTTTACGCTTTTGCTTAATTGCCTAACGAATCCTAAGTTTGAAATTTCCTTGGAAGAGA TCTCTTCTTCTATTCAATTCGCCGATTATTATGGACTGACAGAAGTGGTGAAAAATTTAGAAGAACAGCTAATAGATGGA TATAAATCTCAGAGATTTGAATCCTTTAACTCCACTGAAGAGAGCTTAGTCGAATTAAAAGAACTTTTAAATTTTGCACA TCGCTATCAATTAAATATTTTGAGGAATTATTTAGAGTTCACCGTTGTGAGCGCCTTATTAAACCAGACCATTCAGTTAT CGGAGTTTGAAAGAATTATAAATCATTTGTCAAATAAGATAGAAGCACTCAATTTTTTGGAGAATACTCATTTAACAAAT GCTCACCTTTTAGCATTAAAAGATTGTAAAAATGTAAAAGTTCTTTATTTTAAGAAATGTCGGGATGTCACTGATGCAGG GTTAGCCCATTTGACACCCTTAACGGCTTTGCAGCATCTAGGTTTAAGCGATTGCGAAAATCTCACTGATGCAGGGTTAG CCCATTTGACAACCTTAACGGCTTTGCAGCATCTAGATCTAAGCGGATGCTGGAATCTCACCGATTCAGGATTAGTCCAT TTGACACCTTTAGTGGGTTTGCAGCATCTAGGTTTAAGCGATTGCGAGAATCTCACCGTTGCAGGATTAGCGCATTTGAC ATCTTTAACGGCTTTGCAACATCTAGATCTAAGGAATTGCTATAACCTTACCGATGCAGGATTGGCGCATTTAACACCCT TAACAGCTTTGCAGCATCTAGATTTAAGCTGTTGCTATAACCTTACTGATGCTGGATTAGCCCATTTGACACCCTTAACA GCTTTGCAGCATCTAAATCTATGCTGCTGTAGAAAACTTACCGATGCAGGATTGGCGCATTTAACACCCTTAACAGCTTT GCAGCATCTAGATTTAAGCTATTGCTATAACCTTACTGATGCAGGATTAGCCCATTTGACACCCTTAACAGCTTTGCTGC ATCTAAATCTAAGCGAATGCTGGAAACTTACTGGTGCAGGATTAGCGCATTTAACACCTTTAGTGGCTTTGCAACATCTA AATCTAAGCAAGTGCAATAACCTCACCGATGCAGGATTAGTTCATTTGGCACCTTTAACCGCTTTGCAGCATCTAAATCT AAGCTGGTGCAAGAAATTCACCGATGCAGGGTTAGCCCATTTAACACTCTTAACGGCTTTGCAATCTCTAGATCTAATTG GCTGTAATAACCTCACCGATGCAGGATTAGTCCATTTGACACCCTTAACGGCTTTGCAATATCTAGATCTAATTGGCTGT AAGAATCTCACCGATGCAGGATTAGAACGTTTTAAAACTTTAGCAGCTTTACCCAATCTAACAATAAAACTAGAAACCGG GCGTCGAAAATAA
Upstream 100 bases:
>100_bases CCTATTTTAACTTATTAATATTGCAATAATTTTTATCTATCCATCATATTGTTAAAACATCTATAAATTAAAATTTATTT CACTTACTTGGATGGTCATT
Downstream 100 bases:
>100_bases AAGAGTACTTTGTCCTAAAAAGATAGTAGATATAAGAATAAAATTTCATTAAAGTTGATCGACTTTCAACAAGGCGCTTC TCTAAGAGAAATATTCGCTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 590; Mature: 590
Protein sequence:
>590_residues MNISNFGFNPSLLANTAIPSYYPPQDINDQLENENTPLDNPLPNLEETNAPTIPTPALSPSSEQVQLSFQEGTSLTISHS QLALLKEKSHYFNNLWSGQFQETLQHPLALTQKDFTLLLNCLTNPKFEISLEEISSSIQFADYYGLTEVVKNLEEQLIDG YKSQRFESFNSTEESLVELKELLNFAHRYQLNILRNYLEFTVVSALLNQTIQLSEFERIINHLSNKIEALNFLENTHLTN AHLLALKDCKNVKVLYFKKCRDVTDAGLAHLTPLTALQHLGLSDCENLTDAGLAHLTTLTALQHLDLSGCWNLTDSGLVH LTPLVGLQHLGLSDCENLTVAGLAHLTSLTALQHLDLRNCYNLTDAGLAHLTPLTALQHLDLSCCYNLTDAGLAHLTPLT ALQHLNLCCCRKLTDAGLAHLTPLTALQHLDLSYCYNLTDAGLAHLTPLTALLHLNLSECWKLTGAGLAHLTPLVALQHL NLSKCNNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGLAHLTLLTALQSLDLIGCNNLTDAGLVHLTPLTALQYLDLIGC KNLTDAGLERFKTLAALPNLTIKLETGRRK
Sequences:
>Translated_590_residues MNISNFGFNPSLLANTAIPSYYPPQDINDQLENENTPLDNPLPNLEETNAPTIPTPALSPSSEQVQLSFQEGTSLTISHS QLALLKEKSHYFNNLWSGQFQETLQHPLALTQKDFTLLLNCLTNPKFEISLEEISSSIQFADYYGLTEVVKNLEEQLIDG YKSQRFESFNSTEESLVELKELLNFAHRYQLNILRNYLEFTVVSALLNQTIQLSEFERIINHLSNKIEALNFLENTHLTN AHLLALKDCKNVKVLYFKKCRDVTDAGLAHLTPLTALQHLGLSDCENLTDAGLAHLTTLTALQHLDLSGCWNLTDSGLVH LTPLVGLQHLGLSDCENLTVAGLAHLTSLTALQHLDLRNCYNLTDAGLAHLTPLTALQHLDLSCCYNLTDAGLAHLTPLT ALQHLNLCCCRKLTDAGLAHLTPLTALQHLDLSYCYNLTDAGLAHLTPLTALLHLNLSECWKLTGAGLAHLTPLVALQHL NLSKCNNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGLAHLTLLTALQSLDLIGCNNLTDAGLVHLTPLTALQYLDLIGC KNLTDAGLERFKTLAALPNLTIKLETGRRK >Mature_590_residues MNISNFGFNPSLLANTAIPSYYPPQDINDQLENENTPLDNPLPNLEETNAPTIPTPALSPSSEQVQLSFQEGTSLTISHS QLALLKEKSHYFNNLWSGQFQETLQHPLALTQKDFTLLLNCLTNPKFEISLEEISSSIQFADYYGLTEVVKNLEEQLIDG YKSQRFESFNSTEESLVELKELLNFAHRYQLNILRNYLEFTVVSALLNQTIQLSEFERIINHLSNKIEALNFLENTHLTN AHLLALKDCKNVKVLYFKKCRDVTDAGLAHLTPLTALQHLGLSDCENLTDAGLAHLTTLTALQHLDLSGCWNLTDSGLVH LTPLVGLQHLGLSDCENLTVAGLAHLTSLTALQHLDLRNCYNLTDAGLAHLTPLTALQHLDLSCCYNLTDAGLAHLTPLT ALQHLNLCCCRKLTDAGLAHLTPLTALQHLDLSYCYNLTDAGLAHLTPLTALLHLNLSECWKLTGAGLAHLTPLVALQHL NLSKCNNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGLAHLTLLTALQSLDLIGCNNLTDAGLVHLTPLTALQYLDLIGC KNLTDAGLERFKTLAALPNLTIKLETGRRK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI22748931, Length=367, Percent_Identity=33.5149863760218, Blast_Score=146, Evalue=5e-35, Organism=Homo sapiens, GI161333852, Length=453, Percent_Identity=27.5938189845475, Blast_Score=110, Evalue=5e-24, Organism=Homo sapiens, GI284447308, Length=343, Percent_Identity=31.4868804664723, Blast_Score=109, Evalue=9e-24, Organism=Homo sapiens, GI161333854, Length=453, Percent_Identity=25.3863134657837, Blast_Score=103, Evalue=4e-22, Organism=Homo sapiens, GI6912466, Length=291, Percent_Identity=31.2714776632302, Blast_Score=102, Evalue=8e-22, Organism=Homo sapiens, GI27734755, Length=448, Percent_Identity=27.4553571428571, Blast_Score=102, Evalue=8e-22, Organism=Homo sapiens, GI289666746, Length=243, Percent_Identity=35.3909465020576, Blast_Score=89, Evalue=8e-18, Organism=Homo sapiens, GI296531375, Length=398, Percent_Identity=27.3869346733668, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI284447314, Length=251, Percent_Identity=33.0677290836653, Blast_Score=87, Evalue=3e-17, Organism=Caenorhabditis elegans, GI25151694, Length=353, Percent_Identity=30.028328611898, Blast_Score=96, Evalue=5e-20, Organism=Caenorhabditis elegans, GI25151696, Length=353, Percent_Identity=30.028328611898, Blast_Score=95, Evalue=1e-19, Organism=Saccharomyces cerevisiae, GI6322549, Length=192, Percent_Identity=34.8958333333333, Blast_Score=96, Evalue=1e-20, Organism=Drosophila melanogaster, GI17647819, Length=348, Percent_Identity=34.1954022988506, Blast_Score=146, Evalue=4e-35, Organism=Drosophila melanogaster, GI24662818, Length=287, Percent_Identity=33.7979094076655, Blast_Score=101, Evalue=2e-21, Organism=Drosophila melanogaster, GI21357913, Length=275, Percent_Identity=33.0909090909091, Blast_Score=93, Evalue=4e-19, Organism=Drosophila melanogaster, GI161076545, Length=356, Percent_Identity=28.0898876404494, Blast_Score=80, Evalue=5e-15, Organism=Drosophila melanogaster, GI24652783, Length=348, Percent_Identity=27.5862068965517, Blast_Score=79, Evalue=7e-15, Organism=Drosophila melanogaster, GI161076547, Length=348, Percent_Identity=27.5862068965517, Blast_Score=79, Evalue=8e-15, Organism=Drosophila melanogaster, GI161076549, Length=348, Percent_Identity=27.5862068965517, Blast_Score=79, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65041; Mature: 65041
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 0.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNISNFGFNPSLLANTAIPSYYPPQDINDQLENENTPLDNPLPNLEETNAPTIPTPALSP CCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SSEQVQLSFQEGTSLTISHSQLALLKEKSHYFNNLWSGQFQETLQHPLALTQKDFTLLLN CCCEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHH CLTNPKFEISLEEISSSIQFADYYGLTEVVKNLEEQLIDGYKSQRFESFNSTEESLVELK HHCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH ELLNFAHRYQLNILRNYLEFTVVSALLNQTIQLSEFERIINHLSNKIEALNFLENTHLTN HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC AHLLALKDCKNVKVLYFKKCRDVTDAGLAHLTPLTALQHLGLSDCENLTDAGLAHLTTLT EEEEEECCCCCCEEEEEHHHCCHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH ALQHLDLSGCWNLTDSGLVHLTPLVGLQHLGLSDCENLTVAGLAHLTSLTALQHLDLRNC HHHHCCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH YNLTDAGLAHLTPLTALQHLDLSCCYNLTDAGLAHLTPLTALQHLNLCCCRKLTDAGLAH CCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH LTPLTALQHLDLSYCYNLTDAGLAHLTPLTALLHLNLSECWKLTGAGLAHLTPLVALQHL HHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHC NLSKCNNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGLAHLTLLTALQSLDLIGCNNLTD CHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCC AGLVHLTPLTALQYLDLIGCKNLTDAGLERFKTLAALPNLTIKLETGRRK CCEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC >Mature Secondary Structure MNISNFGFNPSLLANTAIPSYYPPQDINDQLENENTPLDNPLPNLEETNAPTIPTPALSP CCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SSEQVQLSFQEGTSLTISHSQLALLKEKSHYFNNLWSGQFQETLQHPLALTQKDFTLLLN CCCEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHH CLTNPKFEISLEEISSSIQFADYYGLTEVVKNLEEQLIDGYKSQRFESFNSTEESLVELK HHCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH ELLNFAHRYQLNILRNYLEFTVVSALLNQTIQLSEFERIINHLSNKIEALNFLENTHLTN HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC AHLLALKDCKNVKVLYFKKCRDVTDAGLAHLTPLTALQHLGLSDCENLTDAGLAHLTTLT EEEEEECCCCCCEEEEEHHHCCHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH ALQHLDLSGCWNLTDSGLVHLTPLVGLQHLGLSDCENLTVAGLAHLTSLTALQHLDLRNC HHHHCCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH YNLTDAGLAHLTPLTALQHLDLSCCYNLTDAGLAHLTPLTALQHLNLCCCRKLTDAGLAH CCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH LTPLTALQHLDLSYCYNLTDAGLAHLTPLTALLHLNLSECWKLTGAGLAHLTPLVALQHL HHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHC NLSKCNNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGLAHLTLLTALQSLDLIGCNNLTD CHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCC AGLVHLTPLTALQYLDLIGCKNLTDAGLERFKTLAALPNLTIKLETGRRK CCEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA