| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446769
Identifier: 46446769
GI number: 46446769
Start: 1363980
End: 1366235
Strand: Direct
Name: 46446769
Synonym: pc1135
Alternate gene names: NA
Gene position: 1363980-1366235 (Clockwise)
Preceding gene: 46446768
Following gene: 46446770
Centisome position: 56.49
GC content: 33.16
Gene sequence:
>2256_bases TTGATTATGAATATCCAAGGATGGAATATTATAGATGTTGCTCGAGAAATTTTCCCACAAGCTCAATGCGAAACGCGAGG GAATGAATGCTTTCTTACTTTACAACCAAATAGTCACGAAACGATTAAATATACGCAAACTTTAAACGATATTTTTAGAC AAAAACATGCCAATTCCAAATCAGTAAAAAAATTAAAATCTGTTTTTCAAAAATATCAATATAAAATTATTCGTCTTGCA GAATTAGAACAAAAAATTTCTAAAACGATTGAAAAGTTACAGCGTTCACTCTTATCTTCACAAAACACCTCTTCGCAAAC TTCATCTACAAAAAAAATGGAAGAACTTTTAACAAAACCAGAGGCACGCCTACGAGCTAGTACCTTAGCAAGTCAAACAG CCCATGGTAAAAATGTCATTTTATTCATCGGCACAACTGGATGCGGAAAATCGACGACGATGAATTATTTGGCTGGCTGC ACGATGCAAAAAGTCGATCGCAAAGCAGCAGGCTTACCATTAGGGTCTAAAAAAAAAATTATCTTGGCTCAAAATCCTTT AACAAAAATTGGTTATAAGGATGACAAATCTCAAACAAGTTATCCTAAAATTTGTGATGATAATGATAACAAATTTGCTT ACTGTGATTGTCCAGGAATGGGTGATACTAAAGGAACTGAAGTTGAGATTTACAACGCTATTTGCATTAAAGAAATTACT GAGAAAGCAAGATCAGTCAAAGGAATCCTTTTTTTTATAGAATATTCTGATTTTAGTACTGGAAAAGGCCAAGGTATTTC AAACAATTTAAAATACCTCCAACTTCTTTTAAAAGACTTTAAGAAATACCAAAGAGCTATATTATTTCTGATTACTAAAG TTTTTGATGATGATGTCGATTTGCTAGGAATGAAAAAACAAATCCTTAAGCGAGTGAAAAAATTAGCTGATAGCAAAGAA GATCTCAAATTAGCCGAATTTTGCCAACAAATCATCGATTCAAACATTTTAAAAGATGAGCTAGGAGAAAGAGTATTGAT TTGTGATCCTTGCGGTGCTACAGCTCTGCAAGAAAAAAACAAAATGCTTGCAACCATGCGAGATTTTTCTTCTTTTCAAT CAACTACTAACAAACAGGACGCATTTGGTTATCCTCTCTCACAAAAAGCCGAGCTACATATTGAAAAAACTAAAACGTTT ATTTTATCTAATGCAAGAAGTCATTTATCAAAGCTTGAAGAAGCAACAAAAACGTATTGGCAAAAACGTTCAATTCCACG GTCTGTCGAAAACTTAAAAGTCTGTTGCGAAGAAATTACTTGCTGGCTTGAAGAGCTAGAAACTCCGACTTTCGCTAAAA TTGCTCTAGGAACCTCTTATTTACAAGTCTCTCAAACATTAACGGATCATTTAAAACAATGTGTAATTTATTGGGAAAAG TTGAAAGAAATTTATCCTCCAAAAAATAAAGAAGAAGAAGAGACTTATCAACTTGATGTCTGTTTAGAAGAAGATTTGAA AAAATTTGTAGTTCATTTACGATCAATACAAGAAAATATTATGCATTATGCCAATCTAGAAGCGCTTTCAAAAGCATTAG AAGCATATGAAATACAAAAAGATCTGGCAAGTTGGCGTCAAAAATTACAAATAGATAAACTGGATGATTTGACTTTAGAT CAATACCTTAAAATAGACGGTGCACTTGGATGTCCTATTCCTTTTCGTAAGCAACTTGAAGAAATCATCATATCAGAAAA TAGCCAAATTAAATTAAAAGAGATCAAAGATGTTTTAACACTTCATCTTCTTAATCCTTTCAAGGTTGACAAAATTGATA AACGTATTGAAGTCAATGCCAGTATCCCATGCGTTGCTTTTTCATCAATTCTTAAAGAAGTTGAAAGCCATTTTCAAACA TCTCAAGCACAAGCAGAACTAATCATATCTGTAAACAAGTCGAAAGAAGCGACTCTTTATCTTGATTGTGATTTAACAGG AAAAGAATTAACTGGTATCAAAGGAAGAACTGTCATCATCAATGCTGCCATAATCAAAGTCATTCCTTCCGAGACTAAAA AAGAATACAAAATAGCTTTAAGCGGCACTTGGCTGAGACCTGGATCTATTTTATTTAACGGTCAACTAGTAGGTACAGAA AAAATCAAAGATAATTGCTTGTTTCTTTACTCTCAAACAGAAACTGATAATGTTGATCATCCCGTGCGTTTGATTGGCTA CGAGTGGCGTTCTTAA
Upstream 100 bases:
>100_bases ATAGCTACTACAACCCGAATGATTACTTTTTAAGTCTAATCTGAGATTTTACAAATTAAGGATAAAAAAATTTAAATTTA TTCATCAATAAATAAGGAAA
Downstream 100 bases:
>100_bases AAAGGTATAGCCAGTACCATAAAATTAACTAAAACTAATCTTAATCAAAAATTTATAAAGGAATATGTATGAATTCTTAT ACCTCTCTTGAAAGTAGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 751; Mature: 751
Protein sequence:
>751_residues MIMNIQGWNIIDVAREIFPQAQCETRGNECFLTLQPNSHETIKYTQTLNDIFRQKHANSKSVKKLKSVFQKYQYKIIRLA ELEQKISKTIEKLQRSLLSSQNTSSQTSSTKKMEELLTKPEARLRASTLASQTAHGKNVILFIGTTGCGKSTTMNYLAGC TMQKVDRKAAGLPLGSKKKIILAQNPLTKIGYKDDKSQTSYPKICDDNDNKFAYCDCPGMGDTKGTEVEIYNAICIKEIT EKARSVKGILFFIEYSDFSTGKGQGISNNLKYLQLLLKDFKKYQRAILFLITKVFDDDVDLLGMKKQILKRVKKLADSKE DLKLAEFCQQIIDSNILKDELGERVLICDPCGATALQEKNKMLATMRDFSSFQSTTNKQDAFGYPLSQKAELHIEKTKTF ILSNARSHLSKLEEATKTYWQKRSIPRSVENLKVCCEEITCWLEELETPTFAKIALGTSYLQVSQTLTDHLKQCVIYWEK LKEIYPPKNKEEEETYQLDVCLEEDLKKFVVHLRSIQENIMHYANLEALSKALEAYEIQKDLASWRQKLQIDKLDDLTLD QYLKIDGALGCPIPFRKQLEEIIISENSQIKLKEIKDVLTLHLLNPFKVDKIDKRIEVNASIPCVAFSSILKEVESHFQT SQAQAELIISVNKSKEATLYLDCDLTGKELTGIKGRTVIINAAIIKVIPSETKKEYKIALSGTWLRPGSILFNGQLVGTE KIKDNCLFLYSQTETDNVDHPVRLIGYEWRS
Sequences:
>Translated_751_residues MIMNIQGWNIIDVAREIFPQAQCETRGNECFLTLQPNSHETIKYTQTLNDIFRQKHANSKSVKKLKSVFQKYQYKIIRLA ELEQKISKTIEKLQRSLLSSQNTSSQTSSTKKMEELLTKPEARLRASTLASQTAHGKNVILFIGTTGCGKSTTMNYLAGC TMQKVDRKAAGLPLGSKKKIILAQNPLTKIGYKDDKSQTSYPKICDDNDNKFAYCDCPGMGDTKGTEVEIYNAICIKEIT EKARSVKGILFFIEYSDFSTGKGQGISNNLKYLQLLLKDFKKYQRAILFLITKVFDDDVDLLGMKKQILKRVKKLADSKE DLKLAEFCQQIIDSNILKDELGERVLICDPCGATALQEKNKMLATMRDFSSFQSTTNKQDAFGYPLSQKAELHIEKTKTF ILSNARSHLSKLEEATKTYWQKRSIPRSVENLKVCCEEITCWLEELETPTFAKIALGTSYLQVSQTLTDHLKQCVIYWEK LKEIYPPKNKEEEETYQLDVCLEEDLKKFVVHLRSIQENIMHYANLEALSKALEAYEIQKDLASWRQKLQIDKLDDLTLD QYLKIDGALGCPIPFRKQLEEIIISENSQIKLKEIKDVLTLHLLNPFKVDKIDKRIEVNASIPCVAFSSILKEVESHFQT SQAQAELIISVNKSKEATLYLDCDLTGKELTGIKGRTVIINAAIIKVIPSETKKEYKIALSGTWLRPGSILFNGQLVGTE KIKDNCLFLYSQTETDNVDHPVRLIGYEWRS >Mature_751_residues MIMNIQGWNIIDVAREIFPQAQCETRGNECFLTLQPNSHETIKYTQTLNDIFRQKHANSKSVKKLKSVFQKYQYKIIRLA ELEQKISKTIEKLQRSLLSSQNTSSQTSSTKKMEELLTKPEARLRASTLASQTAHGKNVILFIGTTGCGKSTTMNYLAGC TMQKVDRKAAGLPLGSKKKIILAQNPLTKIGYKDDKSQTSYPKICDDNDNKFAYCDCPGMGDTKGTEVEIYNAICIKEIT EKARSVKGILFFIEYSDFSTGKGQGISNNLKYLQLLLKDFKKYQRAILFLITKVFDDDVDLLGMKKQILKRVKKLADSKE DLKLAEFCQQIIDSNILKDELGERVLICDPCGATALQEKNKMLATMRDFSSFQSTTNKQDAFGYPLSQKAELHIEKTKTF ILSNARSHLSKLEEATKTYWQKRSIPRSVENLKVCCEEITCWLEELETPTFAKIALGTSYLQVSQTLTDHLKQCVIYWEK LKEIYPPKNKEEEETYQLDVCLEEDLKKFVVHLRSIQENIMHYANLEALSKALEAYEIQKDLASWRQKLQIDKLDDLTLD QYLKIDGALGCPIPFRKQLEEIIISENSQIKLKEIKDVLTLHLLNPFKVDKIDKRIEVNASIPCVAFSSILKEVESHFQT SQAQAELIISVNKSKEATLYLDCDLTGKELTGIKGRTVIINAAIIKVIPSETKKEYKIALSGTWLRPGSILFNGQLVGTE KIKDNCLFLYSQTETDNVDHPVRLIGYEWRS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 85557; Mature: 85557
Theoretical pI: Translated: 8.54; Mature: 8.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIMNIQGWNIIDVAREIFPQAQCETRGNECFLTLQPNSHETIKYTQTLNDIFRQKHANSK CEEECCCCCHHHHHHHHCCCCHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCHH SVKKLKSVFQKYQYKIIRLAELEQKISKTIEKLQRSLLSSQNTSSQTSSTKKMEELLTKP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC EARLRASTLASQTAHGKNVILFIGTTGCGKSTTMNYLAGCTMQKVDRKAAGLPLGSKKKI HHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHCCHHHHHHHHHCCCCCCCCCEE ILAQNPLTKIGYKDDKSQTSYPKICDDNDNKFAYCDCPGMGDTKGTEVEIYNAICIKEIT EEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEHHHHHHHHH EKARSVKGILFFIEYSDFSTGKGQGISNNLKYLQLLLKDFKKYQRAILFLITKVFDDDVD HHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH LLGMKKQILKRVKKLADSKEDLKLAEFCQQIIDSNILKDELGERVLICDPCGATALQEKN HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHCCEEEEECCCCCHHHHHHH KMLATMRDFSSFQSTTNKQDAFGYPLSQKAELHIEKTKTFILSNARSHLSKLEEATKTYW HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH QKRSIPRSVENLKVCCEEITCWLEELETPTFAKIALGTSYLQVSQTLTDHLKQCVIYWEK HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHCHHHHHHHHHHHHHHHHHHHHHHH LKEIYPPKNKEEEETYQLDVCLEEDLKKFVVHLRSIQENIMHYANLEALSKALEAYEIQK HHHHCCCCCCCCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH DLASWRQKLQIDKLDDLTLDQYLKIDGALGCPIPFRKQLEEIIISENSQIKLKEIKDVLT HHHHHHHHCCCCCCCCCCHHHHHEECCCCCCCCCHHHHHHHHHHCCCCCEEHHHHHHHHH LHLLNPFKVDKIDKRIEVNASIPCVAFSSILKEVESHFQTSQAQAELIISVNKSKEATLY HHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEE LDCDLTGKELTGIKGRTVIINAAIIKVIPSETKKEYKIALSGTWLRPGSILFNGQLVGTE EEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEECEECCCCEEECCEEEEHH KIKDNCLFLYSQTETDNVDHPVRLIGYEWRS HCCCCEEEEEECCCCCCCCCCEEEEEEECCC >Mature Secondary Structure MIMNIQGWNIIDVAREIFPQAQCETRGNECFLTLQPNSHETIKYTQTLNDIFRQKHANSK CEEECCCCCHHHHHHHHCCCCHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCHH SVKKLKSVFQKYQYKIIRLAELEQKISKTIEKLQRSLLSSQNTSSQTSSTKKMEELLTKP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC EARLRASTLASQTAHGKNVILFIGTTGCGKSTTMNYLAGCTMQKVDRKAAGLPLGSKKKI HHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHCCHHHHHHHHHCCCCCCCCCEE ILAQNPLTKIGYKDDKSQTSYPKICDDNDNKFAYCDCPGMGDTKGTEVEIYNAICIKEIT EEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEHHHHHHHHH EKARSVKGILFFIEYSDFSTGKGQGISNNLKYLQLLLKDFKKYQRAILFLITKVFDDDVD HHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH LLGMKKQILKRVKKLADSKEDLKLAEFCQQIIDSNILKDELGERVLICDPCGATALQEKN HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHCCEEEEECCCCCHHHHHHH KMLATMRDFSSFQSTTNKQDAFGYPLSQKAELHIEKTKTFILSNARSHLSKLEEATKTYW HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH QKRSIPRSVENLKVCCEEITCWLEELETPTFAKIALGTSYLQVSQTLTDHLKQCVIYWEK HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHCHHHHHHHHHHHHHHHHHHHHHHH LKEIYPPKNKEEEETYQLDVCLEEDLKKFVVHLRSIQENIMHYANLEALSKALEAYEIQK HHHHCCCCCCCCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH DLASWRQKLQIDKLDDLTLDQYLKIDGALGCPIPFRKQLEEIIISENSQIKLKEIKDVLT HHHHHHHHCCCCCCCCCCHHHHHEECCCCCCCCCHHHHHHHHHHCCCCCEEHHHHHHHHH LHLLNPFKVDKIDKRIEVNASIPCVAFSSILKEVESHFQTSQAQAELIISVNKSKEATLY HHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEE LDCDLTGKELTGIKGRTVIINAAIIKVIPSETKKEYKIALSGTWLRPGSILFNGQLVGTE EEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEECEECCCCEEECCEEEEHH KIKDNCLFLYSQTETDNVDHPVRLIGYEWRS HCCCCEEEEEECCCCCCCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA