| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446753
Identifier: 46446753
GI number: 46446753
Start: 1343063
End: 1344028
Strand: Reverse
Name: 46446753
Synonym: pc1119
Alternate gene names: NA
Gene position: 1344028-1343063 (Counterclockwise)
Preceding gene: 46446757
Following gene: 46446752
Centisome position: 55.67
GC content: 31.78
Gene sequence:
>966_bases TTGAAAGATTTAAATTGCTTAAGTCAGTCAATGAAGGTTTTTGAGATTAATTTGTTGAAACAAATAAAAGAGTTTCTTTA TGTTAATCAGTTTAGTAAAACTCTAATGGCGTATATGAATTACTTTTTAAGTATTATTTTTCTATTTTTTATAAATACTT GTGAAGGTTATATTTACGATCTTTCTGTCTGCGCTATTTTCAAAAACGAAGCCCCTTATTTAAGAGAATGGATAGAATAT CATCGTTTAATAGGTGTGAAGCATTTTTATTTATATAATCATGACAGTACAGACCACTATGATTGCATTTTAGAGCCTTA TATTCAGTTAGGGATAGTTGAGCTTGAAAATGCCATTAATTATCCTGATTTTAATGGAACACAAGTTGATTGTTATAATA GATGTTTGATTAAAAGCAGAGGAGTTTCTACATGGGTTGCTTTTATTGATATCGATGAATTCATTTTACCAGCTTTAAAT GTAGATTTAGCTTGGCTTCTTTCTCATTATATAAATTATGCAGGAGTCGCTTTAAATTGGCGCTGTTTTGGAACGTCTCA AATTGCTAATTTAAAGGAAGATGAGCTTATGATTAGTCAATTAGTCATGTGTTCGCTCCCTGACTATTCTGCAAATGTTC ATGTCAAAAGTATCGTGCGCCCAGAGTTGGTCGTGCAGTTTTGTTGTCCGCATAATCCAGTTTATGTACCAGGTTATTAT GCTGTAGATGTAGATAAGTTTCCTCAAGAAGGTCCTTTAAGTCAAACTGTTAAGCTTAACCAAATTAGAATTAACCATTA CTGGACTCGTGATGAACATTTTTTTACTCAATATAAAAAACCTCGACGGTTGGCCTGGGGTGATTCAGAGGCTCAAATTT ACTTATTTTTAAAAGATTTAAACGTTGATCGCGACGAGACTATTTTAAGGTATATTTCAAGATTGAAAATAGCAATAGAA AAGTAA
Upstream 100 bases:
>100_bases ACTTAGATGGATGATCCAGAGTAATAAGCGTTTTTAATGCCTATTATATAGATTGTCTATTTTGATACCATAATTACTCT TCCTCTGTAAAGAAGATGGA
Downstream 100 bases:
>100_bases TTTTTTTAATCCCTACCTCACCTCACCCTCACAAAATTGATAATGATTGCTAGCAGTACAGATTCTTTAATATATAGGCC TACTCAAAAGTTTCTTAAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 321; Mature: 321
Protein sequence:
>321_residues MKDLNCLSQSMKVFEINLLKQIKEFLYVNQFSKTLMAYMNYFLSIIFLFFINTCEGYIYDLSVCAIFKNEAPYLREWIEY HRLIGVKHFYLYNHDSTDHYDCILEPYIQLGIVELENAINYPDFNGTQVDCYNRCLIKSRGVSTWVAFIDIDEFILPALN VDLAWLLSHYINYAGVALNWRCFGTSQIANLKEDELMISQLVMCSLPDYSANVHVKSIVRPELVVQFCCPHNPVYVPGYY AVDVDKFPQEGPLSQTVKLNQIRINHYWTRDEHFFTQYKKPRRLAWGDSEAQIYLFLKDLNVDRDETILRYISRLKIAIE K
Sequences:
>Translated_321_residues MKDLNCLSQSMKVFEINLLKQIKEFLYVNQFSKTLMAYMNYFLSIIFLFFINTCEGYIYDLSVCAIFKNEAPYLREWIEY HRLIGVKHFYLYNHDSTDHYDCILEPYIQLGIVELENAINYPDFNGTQVDCYNRCLIKSRGVSTWVAFIDIDEFILPALN VDLAWLLSHYINYAGVALNWRCFGTSQIANLKEDELMISQLVMCSLPDYSANVHVKSIVRPELVVQFCCPHNPVYVPGYY AVDVDKFPQEGPLSQTVKLNQIRINHYWTRDEHFFTQYKKPRRLAWGDSEAQIYLFLKDLNVDRDETILRYISRLKIAIE K >Mature_321_residues MKDLNCLSQSMKVFEINLLKQIKEFLYVNQFSKTLMAYMNYFLSIIFLFFINTCEGYIYDLSVCAIFKNEAPYLREWIEY HRLIGVKHFYLYNHDSTDHYDCILEPYIQLGIVELENAINYPDFNGTQVDCYNRCLIKSRGVSTWVAFIDIDEFILPALN VDLAWLLSHYINYAGVALNWRCFGTSQIANLKEDELMISQLVMCSLPDYSANVHVKSIVRPELVVQFCCPHNPVYVPGYY AVDVDKFPQEGPLSQTVKLNQIRINHYWTRDEHFFTQYKKPRRLAWGDSEAQIYLFLKDLNVDRDETILRYISRLKIAIE K
Specific function: Unknown
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37862; Mature: 37862
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDLNCLSQSMKVFEINLLKQIKEFLYVNQFSKTLMAYMNYFLSIIFLFFINTCEGYIYD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE LSVCAIFKNEAPYLREWIEYHRLIGVKHFYLYNHDSTDHYDCILEPYIQLGIVELENAIN EEEEEEECCCCHHHHHHHHHHHHHCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC YPDFNGTQVDCYNRCLIKSRGVSTWVAFIDIDEFILPALNVDLAWLLSHYINYAGVALNW CCCCCCCEEHHHHHHHHHCCCCEEEEEEEEHHHHHHHHCCCCHHHHHHHHHHHCCEEEEE RCFGTSQIANLKEDELMISQLVMCSLPDYSANVHVKSIVRPELVVQFCCPHNPVYVPGYY EEECCHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEHHHCCHHHHHHEECCCCCEEECCEE AVDVDKFPQEGPLSQTVKLNQIRINHYWTRDEHFFTQYKKPRRLAWGDSEAQIYLFLKDL EEECCCCCCCCCCCCCEEEEEEEEEEEEECCHHHHHHCCCCCCCCCCCCCCEEEEEEEEC NVDRDETILRYISRLKIAIEK CCCHHHHHHHHHHHHHHEECC >Mature Secondary Structure MKDLNCLSQSMKVFEINLLKQIKEFLYVNQFSKTLMAYMNYFLSIIFLFFINTCEGYIYD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE LSVCAIFKNEAPYLREWIEYHRLIGVKHFYLYNHDSTDHYDCILEPYIQLGIVELENAIN EEEEEEECCCCHHHHHHHHHHHHHCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC YPDFNGTQVDCYNRCLIKSRGVSTWVAFIDIDEFILPALNVDLAWLLSHYINYAGVALNW CCCCCCCEEHHHHHHHHHCCCCEEEEEEEEHHHHHHHHCCCCHHHHHHHHHHHCCEEEEE RCFGTSQIANLKEDELMISQLVMCSLPDYSANVHVKSIVRPELVVQFCCPHNPVYVPGYY EEECCHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEHHHCCHHHHHHEECCCCCEEECCEE AVDVDKFPQEGPLSQTVKLNQIRINHYWTRDEHFFTQYKKPRRLAWGDSEAQIYLFLKDL EEECCCCCCCCCCCCCEEEEEEEEEEEEECCHHHHHHCCCCCCCCCCCCCCEEEEEEEEC NVDRDETILRYISRLKIAIEK CCCHHHHHHHHHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA