| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446667
Identifier: 46446667
GI number: 46446667
Start: 1222606
End: 1224594
Strand: Reverse
Name: 46446667
Synonym: pc1033
Alternate gene names: NA
Gene position: 1224594-1222606 (Counterclockwise)
Preceding gene: 46446668
Following gene: 46446666
Centisome position: 50.72
GC content: 39.27
Gene sequence:
>1989_bases TTGAATATTTCTAATTTTGGGCTTAATTCTAGTTATCTTGTCAATACAACGAATCCATCTTACTATCCTCTTCAAGACAT TAACGATCAACTTGAGAATGAAAATACTCCCTTAGACAATCCTTTGCCTAATCTAGAAGAAACTAGTGCGTCAACGATTC AACCTTCCACTCTTTCACCTTCATCTGAAGAAGTTCAACTAAGCTTTCACGAGGGAACTTCTCTAACTATTTCTCCTTCT CAGTTAGCTTTGTTAAGGGAAAAATCCCTTTATTTTAAAACTCTTTGGTCAGGAAATTTTCAAGAAACCCTGCAACACCC TCTCGATTTAACAAAAAAAGACTTTACGCTTTTGCTCAATTTCCTGATGGACGCTAACTTTAAAGTTCCCTTAGAAGAGA TTATTTCTGCCATTCAACTAACCGATTATTATGAACTAACAGAAGTAGTGAAGAATTTAGAAAAACAGCTGATGGAGGAA TATAAATCTCAGAGATTTGAACCTTTTAACTCTACTGAAGAAAGTTTAGTCAGATTAAAAGAGATTTTAAGTTTCGCGCA GCGCTGTCAATTAAATACATTGAAGAACTATTTAGAATTCACCGTTGTGAGCGAATTATTAAACAAGGCCTTTCTGTCGG ATGAGTTTGGAAGAATTATAAATCATTTTTCAAATGAGATAAAAATTCTTAATCTTCCAAACAAAATTTTAAACAATGCC TGTTTTTTAGCATTAAAAAGTTGTGAAAATTTAAAAGTACTTCATTTTAAGGAATGCAGGCATCTCACCGATGCAGGATT AGCGCATTTAACACCCTTAACGGCTTTGCAGCATCTAGGTCTAGGCCAATGCTGGCGTCTCACCAATGCAGGATTAGCGC ATTTAACACCCTTAACCGCTTTGCAGTATCTAAATCTAAGCGAATATAAGAATCTCACTGATGCAGGTTTAGCCCATTTG ACACCCTTAACGGCTCTGCAGCATCTAGGTTTAAGCGGTTGTCAGAATCTCACGGATGCAGGATTAGCGCATTTAACACC CTTAATGGGTTTACAGCATCTAGATTTAAGCGGTTGCCAGAATCTCACCGATGCAGGATTAGCCCATTTGACACCTTTAA CGGGTTTGCAGCATCTAAATCTAAGCAGGTGCAATAAACTCACCGACGCAGGATTAGCACATTTGACACCTTTAACGGGT TTGCAGCATCTTGATTTAAGCGGTTGCCAGAATCTCACCGATGCAGGATTAGCGCATTTGACACCTTTAACGGGTTTGCA GCATCTTGATTTAAGCGGTTGCCAGAATCTCACCGATGCAGGATTAGCGCATTTGACACCTTTAACGGGTTTGCAGCATC TTAATCTGTGTAATTGTAGAAAATTCACGGATAATGGATTAGCGCATTTAACACCCTTATCAGTTTTACAACATCTAAAT CTAAGCAGGTGCAATAAACTCACTGATGTTGGATTAGCGCATTTAACACCCTTAACGGCTTTGCAGCATTTAGATCTGAG TAGTTGCTATAATCTCACCGATGTAGGATTAGCGCATTTGACACCTTTAACGAGTTTGCAGCATCTAGGTTTAATCTCTT GCGATAAACTTACCGATGCCGGATTAGTGCATTTGAAACTCTTAACGGGTTTGCAGCATCTAAATCTGAGCAATTGCAAG AATCTCACGGATGCAGGATTAGCGCATTTGACACCCTTAACCGCTTTGCAGTATCTATATCTAAACTGGTGCAGGAAACT CACTGATGCAGGATTAGCGCATTTAACATCCTTAACGGCTTTGCAGCATCTAGATTTGAGATATTGTCAAAATCTCACGG ATGCAGGGTTAGCGCATTTGACACCCTTAACGGGTTTGCGGCATCTAGATTTAAGCCAATGCTGGCGTCTCACCAAAGCA GGGTTAGCACGTTTTAAAACTTTAGCAGCTTCACTCAATCTAGAAATAAGGCTGGGTAGCTTTCCATAA
Upstream 100 bases:
>100_bases CCTATTTTAACTTATTAATATTGCAATAATTTTATCTATAAATAATATTGTTAAAACATCTATAAAATGAAAATTTATTT TACTCAGTGGGATGGTCATT
Downstream 100 bases:
>100_bases AGAAGGTAACTAGGGCCAAAAATAAAAGAGTGAGTATTTTGTTTTAAAAAGTTAAGGGATAAAATTTCATTAAAGTTTAT CAATTCTCGTTGAGACGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 662; Mature: 662
Protein sequence:
>662_residues MNISNFGLNSSYLVNTTNPSYYPLQDINDQLENENTPLDNPLPNLEETSASTIQPSTLSPSSEEVQLSFHEGTSLTISPS QLALLREKSLYFKTLWSGNFQETLQHPLDLTKKDFTLLLNFLMDANFKVPLEEIISAIQLTDYYELTEVVKNLEKQLMEE YKSQRFEPFNSTEESLVRLKEILSFAQRCQLNTLKNYLEFTVVSELLNKAFLSDEFGRIINHFSNEIKILNLPNKILNNA CFLALKSCENLKVLHFKECRHLTDAGLAHLTPLTALQHLGLGQCWRLTNAGLAHLTPLTALQYLNLSEYKNLTDAGLAHL TPLTALQHLGLSGCQNLTDAGLAHLTPLMGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLSRCNKLTDAGLAHLTPLTG LQHLDLSGCQNLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLCNCRKFTDNGLAHLTPLSVLQHLN LSRCNKLTDVGLAHLTPLTALQHLDLSSCYNLTDVGLAHLTPLTSLQHLGLISCDKLTDAGLVHLKLLTGLQHLNLSNCK NLTDAGLAHLTPLTALQYLYLNWCRKLTDAGLAHLTSLTALQHLDLRYCQNLTDAGLAHLTPLTGLRHLDLSQCWRLTKA GLARFKTLAASLNLEIRLGSFP
Sequences:
>Translated_662_residues MNISNFGLNSSYLVNTTNPSYYPLQDINDQLENENTPLDNPLPNLEETSASTIQPSTLSPSSEEVQLSFHEGTSLTISPS QLALLREKSLYFKTLWSGNFQETLQHPLDLTKKDFTLLLNFLMDANFKVPLEEIISAIQLTDYYELTEVVKNLEKQLMEE YKSQRFEPFNSTEESLVRLKEILSFAQRCQLNTLKNYLEFTVVSELLNKAFLSDEFGRIINHFSNEIKILNLPNKILNNA CFLALKSCENLKVLHFKECRHLTDAGLAHLTPLTALQHLGLGQCWRLTNAGLAHLTPLTALQYLNLSEYKNLTDAGLAHL TPLTALQHLGLSGCQNLTDAGLAHLTPLMGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLSRCNKLTDAGLAHLTPLTG LQHLDLSGCQNLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLCNCRKFTDNGLAHLTPLSVLQHLN LSRCNKLTDVGLAHLTPLTALQHLDLSSCYNLTDVGLAHLTPLTSLQHLGLISCDKLTDAGLVHLKLLTGLQHLNLSNCK NLTDAGLAHLTPLTALQYLYLNWCRKLTDAGLAHLTSLTALQHLDLRYCQNLTDAGLAHLTPLTGLRHLDLSQCWRLTKA GLARFKTLAASLNLEIRLGSFP >Mature_662_residues MNISNFGLNSSYLVNTTNPSYYPLQDINDQLENENTPLDNPLPNLEETSASTIQPSTLSPSSEEVQLSFHEGTSLTISPS QLALLREKSLYFKTLWSGNFQETLQHPLDLTKKDFTLLLNFLMDANFKVPLEEIISAIQLTDYYELTEVVKNLEKQLMEE YKSQRFEPFNSTEESLVRLKEILSFAQRCQLNTLKNYLEFTVVSELLNKAFLSDEFGRIINHFSNEIKILNLPNKILNNA CFLALKSCENLKVLHFKECRHLTDAGLAHLTPLTALQHLGLGQCWRLTNAGLAHLTPLTALQYLNLSEYKNLTDAGLAHL TPLTALQHLGLSGCQNLTDAGLAHLTPLMGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLSRCNKLTDAGLAHLTPLTG LQHLDLSGCQNLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLCNCRKFTDNGLAHLTPLSVLQHLN LSRCNKLTDVGLAHLTPLTALQHLDLSSCYNLTDVGLAHLTPLTSLQHLGLISCDKLTDAGLVHLKLLTGLQHLNLSNCK NLTDAGLAHLTPLTALQYLYLNWCRKLTDAGLAHLTSLTALQHLDLRYCQNLTDAGLAHLTPLTGLRHLDLSQCWRLTKA GLARFKTLAASLNLEIRLGSFP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI22748931, Length=299, Percent_Identity=36.7892976588629, Blast_Score=149, Evalue=1e-35, Organism=Homo sapiens, GI161333852, Length=474, Percent_Identity=27.0042194092827, Blast_Score=129, Evalue=1e-29, Organism=Homo sapiens, GI284447308, Length=310, Percent_Identity=34.1935483870968, Blast_Score=125, Evalue=9e-29, Organism=Homo sapiens, GI161333854, Length=463, Percent_Identity=26.5658747300216, Blast_Score=122, Evalue=9e-28, Organism=Homo sapiens, GI27734755, Length=312, Percent_Identity=32.6923076923077, Blast_Score=110, Evalue=3e-24, Organism=Homo sapiens, GI6912466, Length=288, Percent_Identity=30.9027777777778, Blast_Score=105, Evalue=1e-22, Organism=Homo sapiens, GI296531375, Length=304, Percent_Identity=31.9078947368421, Blast_Score=99, Evalue=1e-20, Organism=Homo sapiens, GI289666746, Length=282, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=3e-20, Organism=Homo sapiens, GI284447314, Length=292, Percent_Identity=31.8493150684932, Blast_Score=95, Evalue=2e-19, Organism=Caenorhabditis elegans, GI25151694, Length=307, Percent_Identity=30.6188925081433, Blast_Score=114, Evalue=1e-25, Organism=Caenorhabditis elegans, GI25151696, Length=307, Percent_Identity=30.6188925081433, Blast_Score=114, Evalue=2e-25, Organism=Saccharomyces cerevisiae, GI6322549, Length=335, Percent_Identity=27.7611940298507, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI17647819, Length=301, Percent_Identity=35.8803986710963, Blast_Score=141, Evalue=2e-33, Organism=Drosophila melanogaster, GI24662818, Length=294, Percent_Identity=34.3537414965986, Blast_Score=105, Evalue=1e-22, Organism=Drosophila melanogaster, GI21357913, Length=261, Percent_Identity=32.9501915708812, Blast_Score=101, Evalue=2e-21, Organism=Drosophila melanogaster, GI161076545, Length=338, Percent_Identity=28.698224852071, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI161076547, Length=338, Percent_Identity=28.698224852071, Blast_Score=94, Evalue=3e-19, Organism=Drosophila melanogaster, GI24652783, Length=338, Percent_Identity=28.698224852071, Blast_Score=94, Evalue=3e-19, Organism=Drosophila melanogaster, GI161076549, Length=338, Percent_Identity=28.698224852071, Blast_Score=94, Evalue=3e-19, Organism=Drosophila melanogaster, GI19921840, Length=385, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=1e-14, Organism=Drosophila melanogaster, GI24646754, Length=270, Percent_Identity=30.7407407407407, Blast_Score=74, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 73060; Mature: 73060
Theoretical pI: Translated: 6.57; Mature: 6.57
Prosite motif: PS50097 BTB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNISNFGLNSSYLVNTTNPSYYPLQDINDQLENENTPLDNPLPNLEETSASTIQPSTLSP CCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SSEEVQLSFHEGTSLTISPSQLALLREKSLYFKTLWSGNFQETLQHPLDLTKKDFTLLLN CCCCEEEEEECCCEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHH FLMDANFKVPLEEIISAIQLTDYYELTEVVKNLEKQLMEEYKSQRFEPFNSTEESLVRLK HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH EILSFAQRCQLNTLKNYLEFTVVSELLNKAFLSDEFGRIINHFSNEIKILNLPNKILNNA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH CFLALKSCENLKVLHFKECRHLTDAGLAHLTPLTALQHLGLGQCWRLTNAGLAHLTPLTA HHHHHHCCCCCEEEEHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHH LQYLNLSEYKNLTDAGLAHLTPLTALQHLGLSGCQNLTDAGLAHLTPLMGLQHLDLSGCQ HHHCCHHHHCCCHHHHHHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHCCCCCCHHHCC NLTDAGLAHLTPLTGLQHLNLSRCNKLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHL CHHHCCHHHHHHHHCHHHCCHHHHHHHHHCCHHHHHHHCCCCCCCCHHCCCHHHCCHHHH TPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLCNCRKFTDNGLAHLTPLSVLQHLN HHHCCCCCCCCHHCCCHHHCCHHHHHHHHCHHHCCCHHCCCCCCCCCHHHCHHHHHHHCC LSRCNKLTDVGLAHLTPLTALQHLDLSSCYNLTDVGLAHLTPLTSLQHLGLISCDKLTDA HHHHHHHHHCCHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCC GLVHLKLLTGLQHLNLSNCKNLTDAGLAHLTPLTALQYLYLNWCRKLTDAGLAHLTSLTA HHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LQHLDLRYCQNLTDAGLAHLTPLTGLRHLDLSQCWRLTKAGLARFKTLAASLNLEIRLGS HHHHHHHHHCCCHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECC FP CC >Mature Secondary Structure MNISNFGLNSSYLVNTTNPSYYPLQDINDQLENENTPLDNPLPNLEETSASTIQPSTLSP CCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SSEEVQLSFHEGTSLTISPSQLALLREKSLYFKTLWSGNFQETLQHPLDLTKKDFTLLLN CCCCEEEEEECCCEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHH FLMDANFKVPLEEIISAIQLTDYYELTEVVKNLEKQLMEEYKSQRFEPFNSTEESLVRLK HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH EILSFAQRCQLNTLKNYLEFTVVSELLNKAFLSDEFGRIINHFSNEIKILNLPNKILNNA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH CFLALKSCENLKVLHFKECRHLTDAGLAHLTPLTALQHLGLGQCWRLTNAGLAHLTPLTA HHHHHHCCCCCEEEEHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHH LQYLNLSEYKNLTDAGLAHLTPLTALQHLGLSGCQNLTDAGLAHLTPLMGLQHLDLSGCQ HHHCCHHHHCCCHHHHHHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHCCCCCCHHHCC NLTDAGLAHLTPLTGLQHLNLSRCNKLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHL CHHHCCHHHHHHHHCHHHCCHHHHHHHHHCCHHHHHHHCCCCCCCCHHCCCHHHCCHHHH TPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLCNCRKFTDNGLAHLTPLSVLQHLN HHHCCCCCCCCHHCCCHHHCCHHHHHHHHCHHHCCCHHCCCCCCCCCHHHCHHHHHHHCC LSRCNKLTDVGLAHLTPLTALQHLDLSSCYNLTDVGLAHLTPLTSLQHLGLISCDKLTDA HHHHHHHHHCCHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCC GLVHLKLLTGLQHLNLSNCKNLTDAGLAHLTPLTALQYLYLNWCRKLTDAGLAHLTSLTA HHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LQHLDLRYCQNLTDAGLAHLTPLTGLRHLDLSQCWRLTKAGLARFKTLAASLNLEIRLGS HHHHHHHHHCCCHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECC FP CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA