| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446665
Identifier: 46446665
GI number: 46446665
Start: 1217895
End: 1219556
Strand: Reverse
Name: 46446665
Synonym: pc1031
Alternate gene names: NA
Gene position: 1219556-1217895 (Counterclockwise)
Preceding gene: 46446666
Following gene: 46446664
Centisome position: 50.51
GC content: 38.87
Gene sequence:
>1662_bases GTGGATGAAAATACTCCCTTAGACAATCCTTTGCCTAATCTAGAAGAAACTAGTGCGTCAACGATTCAACCTTCCGCTCT TTCACCTTTATCTGAAGAACTTCAACTAAACTTTCACGAGGGAACTTCTCTGACTATTTCTCACTCTCAGCTAGCTTTGT TAAGGGAAAAATCCCTCTATTTTAAAAATTTGTGGTCGGGGCAATTTCAAGAAACCCTGCAACATCCTCTGGCTTTAACA CAAAAAGACTTTACGCTTTTGCTCAATTGCCTGATGGACGTTAACTTTAATGTTCCCTTAGAAGAGATTACTTCTTCCAT TCACCTAGCCGATTATTATGAACTGGCAGAAGTGGTGAAAAATTTAGAAGAACAGCTGATTGATGGATACAAATTACAAA GATTTGAACCCTTTAACTCCACTGAAGAAAGTTTAGTCAGATTAAAAGAGATTTTAAGTTTCGCGCGTCGCTGTCAATTA AATAGATTGAAGAACTATTTAGAATTCACTGTTGTGAGCGCCTTATTAAACCAGACCTCTCAGTTAGCCGAGTTTAAAAG AATTATAAATCACTTCTTAAAGAAGATAGAAACACTCAATTTTTCAGACAATGCTTATTTAACAGATGCCCATCTTTTAG CATTAAAAGATTGTGAAAATTTAAAAGTACTTCATTGTAAGAAATGTTGGGGTGTCACTGATGCAGGATTAGCGCATTTG ACACCTTTAACAGCTTTGCAACGTCTAGATCTGAGCTATTGCGAGAATCTCACGGATGATGGATTAGCCCATTTGACGCC CTTAACAGCTTTGCAACACCTAGATCTGAGCTATTGTGAGAATCTCACGGATGATGGATTAGCCCATTTAGCACCTTTAA AGGCTTTGCAGCGTCTAGCTCTAACTAACTGTAAAAATCTCACCGATGCAGGATTAACCCATTTGACAACTTTAACGGCT TTGCAGCATCTAGATTTAAGCCAATACTGGAAACTCACCGATGCGGGATTAGCGCATTTGAAACCTTTAACGGCTTTGCA GCATCTAGATCTAAGTCTATGCTATTATCTCACTGACGCTGGAATAGCGCATTTAAAACCCTTAACGGCTTTGCAGCATC TAGATTTAAGTCAATATAGAAATCTCACGGATGCTGGATTAGCCCATTTGACGCCTTTAATGGGTTTGCAGTATCTAAAT CTGAGTGCGTGCAAGAATCTCACGGATGCTGGATTAGCCCATTTGGCACCCTTAACCGCTTTGCAACATCTAAATCTAAG TAGTTGCTATAATCTCACCGATGCCGGATTAGTCCATTTGATACCCTTAACGGCTTTGCAGCATCTATATCTAAGCGATT GGGAGAATCTCACGGATACTGGATTAGCTCATTTGGCACCTTTAACAGCTTTGCAGCATCTCAATCTAAGCAACTGTAGG AAACTCACTGATGATGGATTAGCGCATTTAAAATCTTTGGTGACTTTGACGCATTTAGATCTAAGTTGGTGCAAAAATTT CACTGATGAGGGATTAACCCATTTGACACCCTTAACGGGTTTGCAATATCTAGTTCTAAGCCTATGCTATCATCTCACTG ACGATGGATTAGCACGTTTTAAAACTTTAGCAGTTTCACACAATTTAAAAATTATTAAATAG
Upstream 100 bases:
>100_bases GGTCATTTTGAATATTTCTAATTTTGGGTTTAATCCTAGTCAACTTGTCCCTACAACGACTCCATCTTACTCCCCTCTTC AAGAGATTAGTGATCCTCTT
Downstream 100 bases:
>100_bases AAAAAACTTTCAATAAAAAGAGAAACCAGGCGGCGAAAATAAAAGCGTACTTTGTCCTAAGTAGATAAAAGATAAAATTT CATTAAATTTGATCAATTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 553; Mature: 553
Protein sequence:
>553_residues MDENTPLDNPLPNLEETSASTIQPSALSPLSEELQLNFHEGTSLTISHSQLALLREKSLYFKNLWSGQFQETLQHPLALT QKDFTLLLNCLMDVNFNVPLEEITSSIHLADYYELAEVVKNLEEQLIDGYKLQRFEPFNSTEESLVRLKEILSFARRCQL NRLKNYLEFTVVSALLNQTSQLAEFKRIINHFLKKIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHL TPLTALQRLDLSYCENLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGLTHLTTLTA LQHLDLSQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDAGLAHLTPLMGLQYLN LSACKNLTDAGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCR KLTDDGLAHLKSLVTLTHLDLSWCKNFTDEGLTHLTPLTGLQYLVLSLCYHLTDDGLARFKTLAVSHNLKIIK
Sequences:
>Translated_553_residues MDENTPLDNPLPNLEETSASTIQPSALSPLSEELQLNFHEGTSLTISHSQLALLREKSLYFKNLWSGQFQETLQHPLALT QKDFTLLLNCLMDVNFNVPLEEITSSIHLADYYELAEVVKNLEEQLIDGYKLQRFEPFNSTEESLVRLKEILSFARRCQL NRLKNYLEFTVVSALLNQTSQLAEFKRIINHFLKKIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHL TPLTALQRLDLSYCENLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGLTHLTTLTA LQHLDLSQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDAGLAHLTPLMGLQYLN LSACKNLTDAGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCR KLTDDGLAHLKSLVTLTHLDLSWCKNFTDEGLTHLTPLTGLQYLVLSLCYHLTDDGLARFKTLAVSHNLKIIK >Mature_553_residues MDENTPLDNPLPNLEETSASTIQPSALSPLSEELQLNFHEGTSLTISHSQLALLREKSLYFKNLWSGQFQETLQHPLALT QKDFTLLLNCLMDVNFNVPLEEITSSIHLADYYELAEVVKNLEEQLIDGYKLQRFEPFNSTEESLVRLKEILSFARRCQL NRLKNYLEFTVVSALLNQTSQLAEFKRIINHFLKKIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHL TPLTALQRLDLSYCENLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGLTHLTTLTA LQHLDLSQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDAGLAHLTPLMGLQYLN LSACKNLTDAGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCR KLTDDGLAHLKSLVTLTHLDLSWCKNFTDEGLTHLTPLTGLQYLVLSLCYHLTDDGLARFKTLAVSHNLKIIK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI22748931, Length=323, Percent_Identity=34.6749226006192, Blast_Score=143, Evalue=4e-34, Organism=Homo sapiens, GI27734755, Length=432, Percent_Identity=28.9351851851852, Blast_Score=116, Evalue=6e-26, Organism=Homo sapiens, GI161333852, Length=398, Percent_Identity=26.1306532663317, Blast_Score=115, Evalue=1e-25, Organism=Homo sapiens, GI161333854, Length=395, Percent_Identity=26.0759493670886, Blast_Score=113, Evalue=4e-25, Organism=Homo sapiens, GI284447308, Length=439, Percent_Identity=27.3348519362187, Blast_Score=106, Evalue=5e-23, Organism=Homo sapiens, GI6912466, Length=281, Percent_Identity=31.3167259786477, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI296531375, Length=414, Percent_Identity=27.2946859903382, Blast_Score=100, Evalue=5e-21, Organism=Homo sapiens, GI284447314, Length=240, Percent_Identity=33.75, Blast_Score=87, Evalue=5e-17, Organism=Homo sapiens, GI289666746, Length=262, Percent_Identity=34.3511450381679, Blast_Score=79, Evalue=8e-15, Organism=Caenorhabditis elegans, GI25151694, Length=307, Percent_Identity=29.9674267100977, Blast_Score=92, Evalue=9e-19, Organism=Caenorhabditis elegans, GI25151696, Length=307, Percent_Identity=29.9674267100977, Blast_Score=92, Evalue=9e-19, Organism=Saccharomyces cerevisiae, GI6322549, Length=361, Percent_Identity=28.808864265928, Blast_Score=94, Evalue=6e-20, Organism=Drosophila melanogaster, GI17647819, Length=303, Percent_Identity=34.3234323432343, Blast_Score=134, Evalue=2e-31, Organism=Drosophila melanogaster, GI24662818, Length=236, Percent_Identity=35.1694915254237, Blast_Score=90, Evalue=5e-18, Organism=Drosophila melanogaster, GI21357913, Length=253, Percent_Identity=32.4110671936759, Blast_Score=87, Evalue=3e-17, Organism=Drosophila melanogaster, GI161076547, Length=378, Percent_Identity=25.9259259259259, Blast_Score=79, Evalue=7e-15, Organism=Drosophila melanogaster, GI24652783, Length=378, Percent_Identity=25.9259259259259, Blast_Score=79, Evalue=7e-15, Organism=Drosophila melanogaster, GI161076545, Length=378, Percent_Identity=25.9259259259259, Blast_Score=79, Evalue=9e-15, Organism=Drosophila melanogaster, GI161076549, Length=378, Percent_Identity=25.9259259259259, Blast_Score=79, Evalue=9e-15, Organism=Drosophila melanogaster, GI24646754, Length=277, Percent_Identity=30.3249097472924, Blast_Score=69, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61872; Mature: 61872
Theoretical pI: Translated: 6.11; Mature: 6.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDENTPLDNPLPNLEETSASTIQPSALSPLSEELQLNFHEGTSLTISHSQLALLREKSLY CCCCCCCCCCCCCCCCCCCCCCCCHHCCCCHHHHEEEEECCCEEEEEHHHHHHHHHHHHH FKNLWSGQFQETLQHPLALTQKDFTLLLNCLMDVNFNVPLEEITSSIHLADYYELAEVVK HHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH NLEEQLIDGYKLQRFEPFNSTEESLVRLKEILSFARRCQLNRLKNYLEFTVVSALLNQTS HHHHHHHCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLAEFKRIINHFLKKIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHL HHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHCCCCCCEEEEHHHCCCCCCCHHHH TPLTALQRLDLSYCENLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLA HHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHH LTNCKNLTDAGLTHLTTLTALQHLDLSQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDA HHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GIAHLKPLTALQHLDLSQYRNLTDAGLAHLTPLMGLQYLNLSACKNLTDAGLAHLAPLTA CHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHH LQHLNLSSCYNLTDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCR HHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHH KLTDDGLAHLKSLVTLTHLDLSWCKNFTDEGLTHLTPLTGLQYLVLSLCYHLTDDGLARF HHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHCHHHHHHHHHHHHHHHHCCCHHHHH KTLAVSHNLKIIK HHHHHCCCCEEEC >Mature Secondary Structure MDENTPLDNPLPNLEETSASTIQPSALSPLSEELQLNFHEGTSLTISHSQLALLREKSLY CCCCCCCCCCCCCCCCCCCCCCCCHHCCCCHHHHEEEEECCCEEEEEHHHHHHHHHHHHH FKNLWSGQFQETLQHPLALTQKDFTLLLNCLMDVNFNVPLEEITSSIHLADYYELAEVVK HHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH NLEEQLIDGYKLQRFEPFNSTEESLVRLKEILSFARRCQLNRLKNYLEFTVVSALLNQTS HHHHHHHCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLAEFKRIINHFLKKIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHL HHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHCCCCCCEEEEHHHCCCCCCCHHHH TPLTALQRLDLSYCENLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLA HHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHH LTNCKNLTDAGLTHLTTLTALQHLDLSQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDA HHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GIAHLKPLTALQHLDLSQYRNLTDAGLAHLTPLMGLQYLNLSACKNLTDAGLAHLAPLTA CHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHH LQHLNLSSCYNLTDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCR HHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHH KLTDDGLAHLKSLVTLTHLDLSWCKNFTDEGLTHLTPLTGLQYLVLSLCYHLTDDGLARF HHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHCHHHHHHHHHHHHHHHHCCCHHHHH KTLAVSHNLKIIK HHHHHCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA