| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is yhxC [H]
Identifier: 46446586
GI number: 46446586
Start: 1150550
End: 1151416
Strand: Reverse
Name: yhxC [H]
Synonym: pc0952
Alternate gene names: 46446586
Gene position: 1151416-1150550 (Counterclockwise)
Preceding gene: 46446587
Following gene: 46446585
Centisome position: 47.69
GC content: 35.76
Gene sequence:
>867_bases ATGATTGAAAAACAGAAAGAAAAGACATTTCCTCCTCAAAAGCAAACTCCTCCTGGTGAACAATTTAAAATGTATCCTTT ACCTAAAGATGAGAAAAAAGATTTAAAAGGAAGCGGTAAATTATTTGATCAAGTAGCCATTATCACGGGAGGCGATAGCG GGATTGGAAGAGCAGTAGCGATTAGTTTTGCAAAAGAAGGAGCTGACATTGTAGTTGTTTATTTAAATGAACATAAAGAT GCGGAAGAAACAAAAAAGCTTGTTGAAGAGAAAGGGAGAAAATGTTTGTTAATTGCAGGGGACATTGGCCAGAATAGTTT TTGCCAATCCGCGATAAAAGAAACGATTCAAGCTTTTGGAAAACTCAATATTTTAGTCAATAATGCGGCTGAACAGCACC CGCAAGTTTCTATTGAAGATATTACTGAAGAGCAGTTAGAGAAAACTTTCAGAACGAATATTTATTCTTTATTTTTTATG ACTAAGGCTGCACTTCCCCATTTAGAAAAGGTTAAAGGGACCATCATTAATACAACCTCTGTTACGGCTTATAAAGGAAA AAAAACTTTAATTGATTATTCAGCGACTAAAGGCGCTATTGTTGCTTTTACTCGTTCTTTATCTTTATCATTAGTTGAAA AAGGAATTCGGGTCAATGGCGTGGCACCAGGGCCTATTTGGACACCTTTAATTACTTCAACTTTTTCTGAAGAAAAAGTT TCTGTTTTTGGTTCTAATGTTCCTATGAAGCGAGCTGGGCAACCAGATGAAGTAGCCCCTTGTTATGTCTTCTTGGCTTC TCAAGATTCTTCTTATATTTCAGGACAAATTTTGCATCCTAATGGGGGAGAAATTATTAATGGTTAA
Upstream 100 bases:
>100_bases AATTAAAGGTTATTTCTTAAAGGACTTTTTACAAAATGCCTTCTATTTTGTAAAAAGTCCTCTTATTCTAAACTTATTAT TCGAAATTTAGGAGATTCTG
Downstream 100 bases:
>100_bases AAAAATTGGAATTTAAGGCTCCCATATGGAAATTCCTTTAAAAGTCATTAAACAAGGTTTATATTGCCCAGACGGAGATT TCTTTATTGATGCTTGGCAA
Product: putative oxidoreductase
Products: NA
Alternate protein names: ORFX [H]
Number of amino acids: Translated: 288; Mature: 288
Protein sequence:
>288_residues MIEKQKEKTFPPQKQTPPGEQFKMYPLPKDEKKDLKGSGKLFDQVAIITGGDSGIGRAVAISFAKEGADIVVVYLNEHKD AEETKKLVEEKGRKCLLIAGDIGQNSFCQSAIKETIQAFGKLNILVNNAAEQHPQVSIEDITEEQLEKTFRTNIYSLFFM TKAALPHLEKVKGTIINTTSVTAYKGKKTLIDYSATKGAIVAFTRSLSLSLVEKGIRVNGVAPGPIWTPLITSTFSEEKV SVFGSNVPMKRAGQPDEVAPCYVFLASQDSSYISGQILHPNGGEIING
Sequences:
>Translated_288_residues MIEKQKEKTFPPQKQTPPGEQFKMYPLPKDEKKDLKGSGKLFDQVAIITGGDSGIGRAVAISFAKEGADIVVVYLNEHKD AEETKKLVEEKGRKCLLIAGDIGQNSFCQSAIKETIQAFGKLNILVNNAAEQHPQVSIEDITEEQLEKTFRTNIYSLFFM TKAALPHLEKVKGTIINTTSVTAYKGKKTLIDYSATKGAIVAFTRSLSLSLVEKGIRVNGVAPGPIWTPLITSTFSEEKV SVFGSNVPMKRAGQPDEVAPCYVFLASQDSSYISGQILHPNGGEIING >Mature_288_residues MIEKQKEKTFPPQKQTPPGEQFKMYPLPKDEKKDLKGSGKLFDQVAIITGGDSGIGRAVAISFAKEGADIVVVYLNEHKD AEETKKLVEEKGRKCLLIAGDIGQNSFCQSAIKETIQAFGKLNILVNNAAEQHPQVSIEDITEEQLEKTFRTNIYSLFFM TKAALPHLEKVKGTIINTTSVTAYKGKKTLIDYSATKGAIVAFTRSLSLSLVEKGIRVNGVAPGPIWTPLITSTFSEEKV SVFGSNVPMKRAGQPDEVAPCYVFLASQDSSYISGQILHPNGGEIING
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI59889578, Length=229, Percent_Identity=31.4410480349345, Blast_Score=124, Evalue=7e-29, Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=30.4, Blast_Score=117, Evalue=2e-26, Organism=Homo sapiens, GI40254992, Length=243, Percent_Identity=32.5102880658436, Blast_Score=115, Evalue=4e-26, Organism=Homo sapiens, GI19923817, Length=253, Percent_Identity=32.0158102766798, Blast_Score=109, Evalue=3e-24, Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=29.2490118577075, Blast_Score=108, Evalue=6e-24, Organism=Homo sapiens, GI10190704, Length=257, Percent_Identity=28.4046692607004, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI5031737, Length=240, Percent_Identity=30, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI4758504, Length=251, Percent_Identity=29.8804780876494, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI66933014, Length=252, Percent_Identity=30.1587301587302, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI31542939, Length=207, Percent_Identity=30.4347826086957, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=25.6916996047431, Blast_Score=88, Evalue=8e-18, Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=30.8900523560209, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI4504505, Length=239, Percent_Identity=28.8702928870293, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI7706318, Length=213, Percent_Identity=27.6995305164319, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI83715985, Length=251, Percent_Identity=27.4900398406374, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI210032110, Length=184, Percent_Identity=29.8913043478261, Blast_Score=79, Evalue=7e-15, Organism=Homo sapiens, GI126723191, Length=180, Percent_Identity=27.7777777777778, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI7705925, Length=243, Percent_Identity=26.3374485596708, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI142976729, Length=216, Percent_Identity=29.1666666666667, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI31543615, Length=167, Percent_Identity=32.3353293413174, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI20149619, Length=205, Percent_Identity=29.2682926829268, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI310128830, Length=196, Percent_Identity=29.0816326530612, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI310115468, Length=196, Percent_Identity=29.0816326530612, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI224922801, Length=168, Percent_Identity=30.952380952381, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI40807363, Length=207, Percent_Identity=28.0193236714976, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI210032112, Length=184, Percent_Identity=28.804347826087, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI226371731, Length=186, Percent_Identity=26.8817204301075, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI1789378, Length=277, Percent_Identity=48.3754512635379, Blast_Score=265, Evalue=2e-72, Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=34.2857142857143, Blast_Score=142, Evalue=3e-35, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=32.7935222672065, Blast_Score=123, Evalue=1e-29, Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=32.5396825396825, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1787335, Length=241, Percent_Identity=30.2904564315353, Blast_Score=122, Evalue=4e-29, Organism=Escherichia coli, GI1788459, Length=242, Percent_Identity=32.6446280991736, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1789208, Length=245, Percent_Identity=30.2040816326531, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI87082160, Length=245, Percent_Identity=32.2448979591837, Blast_Score=110, Evalue=8e-26, Organism=Escherichia coli, GI1790717, Length=244, Percent_Identity=27.8688524590164, Blast_Score=107, Evalue=9e-25, Organism=Escherichia coli, GI2367365, Length=240, Percent_Identity=27.0833333333333, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787526, Length=265, Percent_Identity=26.0377358490566, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1789057, Length=261, Percent_Identity=24.5210727969349, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1786812, Length=250, Percent_Identity=25.2, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1788891, Length=243, Percent_Identity=25.5144032921811, Blast_Score=67, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17551412, Length=257, Percent_Identity=38.1322957198444, Blast_Score=139, Evalue=2e-33, Organism=Caenorhabditis elegans, GI17560332, Length=261, Percent_Identity=36.0153256704981, Blast_Score=137, Evalue=5e-33, Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=35.7414448669202, Blast_Score=132, Evalue=2e-31, Organism=Caenorhabditis elegans, GI17560150, Length=254, Percent_Identity=35.4330708661417, Blast_Score=132, Evalue=2e-31, Organism=Caenorhabditis elegans, GI193204405, Length=256, Percent_Identity=35.546875, Blast_Score=131, Evalue=3e-31, Organism=Caenorhabditis elegans, GI17561402, Length=246, Percent_Identity=35.7723577235772, Blast_Score=131, Evalue=4e-31, Organism=Caenorhabditis elegans, GI17560676, Length=245, Percent_Identity=33.469387755102, Blast_Score=127, Evalue=7e-30, Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=33.587786259542, Blast_Score=124, Evalue=5e-29, Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=35.8778625954198, Blast_Score=124, Evalue=7e-29, Organism=Caenorhabditis elegans, GI17562990, Length=254, Percent_Identity=34.6456692913386, Blast_Score=123, Evalue=1e-28, Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=32.183908045977, Blast_Score=122, Evalue=3e-28, Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=33.206106870229, Blast_Score=121, Evalue=4e-28, Organism=Caenorhabditis elegans, GI17562904, Length=260, Percent_Identity=30.7692307692308, Blast_Score=119, Evalue=1e-27, Organism=Caenorhabditis elegans, GI72000259, Length=257, Percent_Identity=34.6303501945525, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=32.824427480916, Blast_Score=117, Evalue=6e-27, Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=32.0610687022901, Blast_Score=117, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=32.0754716981132, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=32.6996197718631, Blast_Score=116, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=32.9545454545455, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=31.7269076305221, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=30.241935483871, Blast_Score=110, Evalue=6e-25, Organism=Caenorhabditis elegans, GI17563726, Length=254, Percent_Identity=33.4645669291339, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17555706, Length=253, Percent_Identity=31.2252964426877, Blast_Score=107, Evalue=8e-24, Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=30.5220883534137, Blast_Score=107, Evalue=9e-24, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=28.0487804878049, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17564282, Length=181, Percent_Identity=34.2541436464088, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17538182, Length=251, Percent_Identity=28.6852589641434, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI17536025, Length=261, Percent_Identity=26.8199233716475, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17567345, Length=192, Percent_Identity=31.25, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17536651, Length=277, Percent_Identity=26.3537906137184, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI193203115, Length=202, Percent_Identity=32.1782178217822, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI193203117, Length=187, Percent_Identity=33.1550802139037, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17568967, Length=249, Percent_Identity=28.1124497991968, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17508895, Length=221, Percent_Identity=28.5067873303167, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71982365, Length=253, Percent_Identity=23.7154150197628, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=254, Percent_Identity=29.1338582677165, Blast_Score=86, Evalue=5e-18, Organism=Saccharomyces cerevisiae, GI6324126, Length=248, Percent_Identity=24.5967741935484, Blast_Score=77, Evalue=3e-15, Organism=Saccharomyces cerevisiae, GI6322861, Length=248, Percent_Identity=26.6129032258064, Blast_Score=76, Evalue=7e-15, Organism=Saccharomyces cerevisiae, GI6322226, Length=208, Percent_Identity=24.5192307692308, Blast_Score=69, Evalue=8e-13, Organism=Drosophila melanogaster, GI21357041, Length=247, Percent_Identity=34.412955465587, Blast_Score=132, Evalue=4e-31, Organism=Drosophila melanogaster, GI28571526, Length=247, Percent_Identity=34.412955465587, Blast_Score=130, Evalue=1e-30, Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=34.4, Blast_Score=125, Evalue=4e-29, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=31.7269076305221, Blast_Score=124, Evalue=9e-29, Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=32.8, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=31.7269076305221, Blast_Score=109, Evalue=3e-24, Organism=Drosophila melanogaster, GI17737361, Length=254, Percent_Identity=27.9527559055118, Blast_Score=95, Evalue=5e-20, Organism=Drosophila melanogaster, GI24644337, Length=228, Percent_Identity=32.0175438596491, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=29.0322580645161, Blast_Score=88, Evalue=6e-18, Organism=Drosophila melanogaster, GI24584748, Length=190, Percent_Identity=27.3684210526316, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI161076933, Length=190, Percent_Identity=27.3684210526316, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI281364892, Length=194, Percent_Identity=29.8969072164948, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24584744, Length=192, Percent_Identity=26.5625, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI28574402, Length=192, Percent_Identity=26.5625, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI221510726, Length=188, Percent_Identity=31.9148936170213, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24641232, Length=206, Percent_Identity=25.2427184466019, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI24581726, Length=206, Percent_Identity=28.1553398058252, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI18859837, Length=196, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 31409; Mature: 31409
Theoretical pI: Translated: 8.43; Mature: 8.43
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIEKQKEKTFPPQKQTPPGEQFKMYPLPKDEKKDLKGSGKLFDQVAIITGGDSGIGRAVA CCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHCCCCCCCEEEEEEEEECCCCCCCCEEE ISFAKEGADIVVVYLNEHKDAEETKKLVEEKGRKCLLIAGDIGQNSFCQSAIKETIQAFG EEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHC KLNILVNNAAEQHPQVSIEDITEEQLEKTFRTNIYSLFFMTKAALPHLEKVKGTIINTTS EEEEEEECCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCEEEECCE VTAYKGKKTLIDYSATKGAIVAFTRSLSLSLVEKGIRVNGVAPGPIWTPLITSTFSEEKV EEEECCCEEEEEECCCCCEEEEEEHHHHHHHHHCCCEECCCCCCCCHHHHHHCCCCCCHH SVFGSNVPMKRAGQPDEVAPCYVFLASQDSSYISGQILHPNGGEIING EEECCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCC >Mature Secondary Structure MIEKQKEKTFPPQKQTPPGEQFKMYPLPKDEKKDLKGSGKLFDQVAIITGGDSGIGRAVA CCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHCCCCCCCEEEEEEEEECCCCCCCCEEE ISFAKEGADIVVVYLNEHKDAEETKKLVEEKGRKCLLIAGDIGQNSFCQSAIKETIQAFG EEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHC KLNILVNNAAEQHPQVSIEDITEEQLEKTFRTNIYSLFFMTKAALPHLEKVKGTIINTTS EEEEEEECCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCEEEECCE VTAYKGKKTLIDYSATKGAIVAFTRSLSLSLVEKGIRVNGVAPGPIWTPLITSTFSEEKV EEEECCCEEEEEECCCCCEEEEEEHHHHHHHHHCCCEECCCCCCCCHHHHHHCCCCCCHH SVFGSNVPMKRAGQPDEVAPCYVFLASQDSSYISGQILHPNGGEIING EEECCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377; 8196543 [H]