| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446550
Identifier: 46446550
GI number: 46446550
Start: 1109769
End: 1111481
Strand: Reverse
Name: 46446550
Synonym: pc0916
Alternate gene names: NA
Gene position: 1111481-1109769 (Counterclockwise)
Preceding gene: 46446551
Following gene: 46446549
Centisome position: 46.03
GC content: 34.03
Gene sequence:
>1713_bases ATGAATAATTTTTTTCTTAACACTTTCAGAAGTTGCGCAATTTTTGTTTTATTCTATGCTTCATTGAGCTTTGCCTCTAC AGAGGATATAAAGAAAGAATCGATGATTGAAGATCTTAAAATGATTAAGCATGCCTTCGATGTAGGGTATGCTCCTTTGG AATGGAAAAAAAATTATACAGGATTGAATTTAGACGAGGAATTGAATAAATCAATTGATCTTATTTTATCGAATCCGACC CTGACCCATAAAGATTTTCAAAGAATTGTTAAAAATTTCTTGGCTTCAACCAAAGACTATCATGTTGATGTTATTTTTTT TTCCACAGAAACTGCCACCCTTCCTTTTGATGTTAAAGGAGTCAATAATCGTTATTTTATTACATGGATCGATGAATTAA AATTACCTCCTTCTACTTATACGATTAAAGTAGGAGATGAAATCATAGAATTTGATGGTCGCCCTTTAGGCGATGTGATC GAAGAGTTAAAACAACATGGAAGTAAAAATTCTAATCCTCTAACAGATCAAGCATTGGCAGAAATTAAATTGACTAATCG ATTAGGATGGCTTGGAGACATCATTCCTCAAGGACCTGTAACTATTAAAGTTCACTCTCGTTCAAAAGAAGTTCCTTTGA GCTACCAACTCATTTGGGATTATCGTCCCGAATTGATTTTTTCACCTTCTTTTTTCCTACAAACTGTGGAAAGTTTTTTT CCTAACAAAAAAATCAGTGTTAGAAGTCCTTGCATGACGATGATGAATTTGACGCATCGTAAAATGATGTCTGAAACAAA GCGGGATGGAACATTATGTGCTCGAAAAAGTTTTATTCCTACTTTAGGGCCCCGTGTTTGGATGTTTGATAAAATTGACA AAGAAAAAGAAATTTCCTGGTATGCCTATATTTATAAAATATCTGAAGAAGAAAAAATCGGATATATCCGCATTCCTCAT TATATTGGTTATAAAGAAGAGAGTAAGGAGTTTGGAGAATTACTAAACTATCTAGAGCAAAAAACAGATGCTTTAGTGAT CGATCAGGTGCATAATGGTGGTGGCTATGCTTCTTTCCAATATGAATTAGCTTCTATGCTTGCTTTAAATCCGCTTAAAA CACCTAAACACCAAATGAAAATTACACAAAAAGATGTTTTGACTGCTTATCAAATTTTAGACGTAATTGAAAAAATTCAA CAAGGAATAGATGATGAGATAGAAGAAGGTCCTATTGATTATCAACATTTATTATTTCTCAAAGCTTTCTATGAATTTAC AATCCAAGAATGGGACGGGCAGCGAACTTTAACCGATCCAACGCATCTAGAAGGGTGTGACTGGATTAATCCTCATTCTG ATTATCGTTATACAAAGCCTATTTTAATGTTGATCAATGAACTCGACTTTTCAGGTGGCGACTTCATGCCAGCTATCATG CAAGATAATCAAAGAGCTGTTCTTTTTGGAACGCGTACATCTGGCGCAGGTGGATTTGTTTTACAGGCCAGTTTTCCAAA TAATAATGGAATTGCTGCATTTTCCTATACGGGTTCTATTGCAGAAAGACCCGAAACTTTATTAAAAATAGAAAATTTGG GTGTCACTCCAGATATTGTTTATTCATTAACTGTTGATGACTTGCAAAATGGTTATCAAGGTTATAAAGCCGCAGTCAAT GAAGCTATACAAGCATTGATTAAGAAAAAATAA
Upstream 100 bases:
>100_bases AATTATTTTATATTTTTGTGTAGTATTATTATGTGATTCATTGAATAGAATAAAAATATAGAAATAGGCCTTAATCTCTT TTAAACCAGAAAAGGTAGAA
Downstream 100 bases:
>100_bases ACTTTTATAAGATTCAAATCTCCAAATTTTGAATACCTTTTCAAAATTTGGAGCCCTAGAATTAATTTGATTAGAACGGC TTTTTGAAACTAGCAAAAAA
Product: protease-like activity factor)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 570; Mature: 570
Protein sequence:
>570_residues MNNFFLNTFRSCAIFVLFYASLSFASTEDIKKESMIEDLKMIKHAFDVGYAPLEWKKNYTGLNLDEELNKSIDLILSNPT LTHKDFQRIVKNFLASTKDYHVDVIFFSTETATLPFDVKGVNNRYFITWIDELKLPPSTYTIKVGDEIIEFDGRPLGDVI EELKQHGSKNSNPLTDQALAEIKLTNRLGWLGDIIPQGPVTIKVHSRSKEVPLSYQLIWDYRPELIFSPSFFLQTVESFF PNKKISVRSPCMTMMNLTHRKMMSETKRDGTLCARKSFIPTLGPRVWMFDKIDKEKEISWYAYIYKISEEEKIGYIRIPH YIGYKEESKEFGELLNYLEQKTDALVIDQVHNGGGYASFQYELASMLALNPLKTPKHQMKITQKDVLTAYQILDVIEKIQ QGIDDEIEEGPIDYQHLLFLKAFYEFTIQEWDGQRTLTDPTHLEGCDWINPHSDYRYTKPILMLINELDFSGGDFMPAIM QDNQRAVLFGTRTSGAGGFVLQASFPNNNGIAAFSYTGSIAERPETLLKIENLGVTPDIVYSLTVDDLQNGYQGYKAAVN EAIQALIKKK
Sequences:
>Translated_570_residues MNNFFLNTFRSCAIFVLFYASLSFASTEDIKKESMIEDLKMIKHAFDVGYAPLEWKKNYTGLNLDEELNKSIDLILSNPT LTHKDFQRIVKNFLASTKDYHVDVIFFSTETATLPFDVKGVNNRYFITWIDELKLPPSTYTIKVGDEIIEFDGRPLGDVI EELKQHGSKNSNPLTDQALAEIKLTNRLGWLGDIIPQGPVTIKVHSRSKEVPLSYQLIWDYRPELIFSPSFFLQTVESFF PNKKISVRSPCMTMMNLTHRKMMSETKRDGTLCARKSFIPTLGPRVWMFDKIDKEKEISWYAYIYKISEEEKIGYIRIPH YIGYKEESKEFGELLNYLEQKTDALVIDQVHNGGGYASFQYELASMLALNPLKTPKHQMKITQKDVLTAYQILDVIEKIQ QGIDDEIEEGPIDYQHLLFLKAFYEFTIQEWDGQRTLTDPTHLEGCDWINPHSDYRYTKPILMLINELDFSGGDFMPAIM QDNQRAVLFGTRTSGAGGFVLQASFPNNNGIAAFSYTGSIAERPETLLKIENLGVTPDIVYSLTVDDLQNGYQGYKAAVN EAIQALIKKK >Mature_570_residues MNNFFLNTFRSCAIFVLFYASLSFASTEDIKKESMIEDLKMIKHAFDVGYAPLEWKKNYTGLNLDEELNKSIDLILSNPT LTHKDFQRIVKNFLASTKDYHVDVIFFSTETATLPFDVKGVNNRYFITWIDELKLPPSTYTIKVGDEIIEFDGRPLGDVI EELKQHGSKNSNPLTDQALAEIKLTNRLGWLGDIIPQGPVTIKVHSRSKEVPLSYQLIWDYRPELIFSPSFFLQTVESFF PNKKISVRSPCMTMMNLTHRKMMSETKRDGTLCARKSFIPTLGPRVWMFDKIDKEKEISWYAYIYKISEEEKIGYIRIPH YIGYKEESKEFGELLNYLEQKTDALVIDQVHNGGGYASFQYELASMLALNPLKTPKHQMKITQKDVLTAYQILDVIEKIQ QGIDDEIEEGPIDYQHLLFLKAFYEFTIQEWDGQRTLTDPTHLEGCDWINPHSDYRYTKPILMLINELDFSGGDFMPAIM QDNQRAVLFGTRTSGAGGFVLQASFPNNNGIAAFSYTGSIAERPETLLKIENLGVTPDIVYSLTVDDLQNGYQGYKAAVN EAIQALIKKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the chlamydial CPn_1016/CT_858/TC_0248 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005151 [H]
Pfam domain/function: PF03572 Peptidase_S41 [H]
EC number: NA
Molecular weight: Translated: 65356; Mature: 65356
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNFFLNTFRSCAIFVLFYASLSFASTEDIKKESMIEDLKMIKHAFDVGYAPLEWKKNYT CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC GLNLDEELNKSIDLILSNPTLTHKDFQRIVKNFLASTKDYHVDVIFFSTETATLPFDVKG CCCCHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCEECCEEEEC VNNRYFITWIDELKLPPSTYTIKVGDEIIEFDGRPLGDVIEELKQHGSKNSNPLTDQALA CCCEEEEEEEECCCCCCCEEEEEECCHHEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHH EIKLTNRLGWLGDIIPQGPVTIKVHSRSKEVPLSYQLIWDYRPELIFSPSFFLQTVESFF HHHHHHHCCHHHHCCCCCCEEEEECCCCCCCCEEEEEEEECCCCEEECHHHHHHHHHHHC PNKKISVRSPCMTMMNLTHRKMMSETKRDGTLCARKSFIPTLGPRVWMFDKIDKEKEISW CCCCEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEECCCCCCCCCEE YAYIYKISEEEKIGYIRIPHYIGYKEESKEFGELLNYLEQKTDALVIDQVHNGGGYASFQ EEEEEEECCCCCCCEEECCHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEHH YELASMLALNPLKTPKHQMKITQKDVLTAYQILDVIEKIQQGIDDEIEEGPIDYQHLLFL HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHH KAFYEFTIQEWDGQRTLTDPTHLEGCDWINPHSDYRYTKPILMLINELDFSGGDFMPAIM HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHH QDNQRAVLFGTRTSGAGGFVLQASFPNNNGIAAFSYTGSIAERPETLLKIENLGVTPDIV CCCCEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCHHHCCHHHEEECCCCCCCCEE YSLTVDDLQNGYQGYKAAVNEAIQALIKKK EEEEHHHHHCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNNFFLNTFRSCAIFVLFYASLSFASTEDIKKESMIEDLKMIKHAFDVGYAPLEWKKNYT CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC GLNLDEELNKSIDLILSNPTLTHKDFQRIVKNFLASTKDYHVDVIFFSTETATLPFDVKG CCCCHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCEECCEEEEC VNNRYFITWIDELKLPPSTYTIKVGDEIIEFDGRPLGDVIEELKQHGSKNSNPLTDQALA CCCEEEEEEEECCCCCCCEEEEEECCHHEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHH EIKLTNRLGWLGDIIPQGPVTIKVHSRSKEVPLSYQLIWDYRPELIFSPSFFLQTVESFF HHHHHHHCCHHHHCCCCCCEEEEECCCCCCCCEEEEEEEECCCCEEECHHHHHHHHHHHC PNKKISVRSPCMTMMNLTHRKMMSETKRDGTLCARKSFIPTLGPRVWMFDKIDKEKEISW CCCCEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEECCCCCCCCCEE YAYIYKISEEEKIGYIRIPHYIGYKEESKEFGELLNYLEQKTDALVIDQVHNGGGYASFQ EEEEEEECCCCCCCEEECCHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEHH YELASMLALNPLKTPKHQMKITQKDVLTAYQILDVIEKIQQGIDDEIEEGPIDYQHLLFL HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHH KAFYEFTIQEWDGQRTLTDPTHLEGCDWINPHSDYRYTKPILMLINELDFSGGDFMPAIM HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHH QDNQRAVLFGTRTSGAGGFVLQASFPNNNGIAAFSYTGSIAERPETLLKIENLGVTPDIV CCCCEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCHHHCCHHHEEECCCCCCCCEE YSLTVDDLQNGYQGYKAAVNEAIQALIKKK EEEEHHHHHCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10684935 [H]