BacMap

Definition	Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession	NC_005861
Length	2,414,465

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The map label for this gene is rbp [H]

Identifier: 46446527

GI number: 46446527

Start: 1078277

End: 1078615

Strand: Direct

Name: rbp [H]

Synonym: pc0893

Alternate gene names: 46446527

Gene position: 1078277-1078615 (Clockwise)

Preceding gene: 46446522

Following gene: 46446531

Centisome position: 44.66

GC content: 42.18

Gene sequence:

>339_bases
ATGAAGAAAATATTTGTTGGTAACCTTTCTTGGAAAACATCGGAAGAGCAGCTTAAAGCTCATTTCGAAGCTTTCGGTAA
AGTTGTTAGCGCCAAGATCGTTACTGATCAAATGACAGGCAAATCTAAAGGCTTCGGCTTTGTAGAAATGGAAAGTGCAA
ACGATGCAGAAAATGCTATTCGCGAATTAAATGGCAAGCCTTTAGTTGATCGTAGTTTGCGTGTAAGCTTAGCGCAAGAA
AGAGATCGTAGCGAAAGAAGAGAGCCACGTTCTTTCGGTGGTGGAGATAGAGACAGATCATCTTTCGGCGGCGACAGACG
TTCTAATTACCGTTCGTAA

Upstream 100 bases:

>100_bases
TTTTTTGCCAAGGCAAAAAGGCATGTCCTTGTTCAGAGTCGAGGGGAGCTGAATAAGCACAAGTTAGACCCCTTGTTAAC
TAAATCCTATGGAGAATTAT

Downstream 100 bases:

>100_bases
TTCAACATCTCTGACTAATCAACTCATATAGATTAGAAAAGGCAAAAGTTTATTACTTTTGCCTTTTTTATTGAGCTAAA
CTTAAATTGATTTCAATAGA

Product: nucleic acid-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 112

Protein sequence:

>112_residues
MKKIFVGNLSWKTSEEQLKAHFEAFGKVVSAKIVTDQMTGKSKGFGFVEMESANDAENAIRELNGKPLVDRSLRVSLAQE
RDRSERREPRSFGGGDRDRSSFGGDRRSNYRS

Sequences:

>Translated_112_residues
MKKIFVGNLSWKTSEEQLKAHFEAFGKVVSAKIVTDQMTGKSKGFGFVEMESANDAENAIRELNGKPLVDRSLRVSLAQE
RDRSERREPRSFGGGDRDRSSFGGDRRSNYRS
>Mature_112_residues
MKKIFVGNLSWKTSEEQLKAHFEAFGKVVSAKIVTDQMTGKSKGFGFVEMESANDAENAIRELNGKPLVDRSLRVSLAQE
RDRSERREPRSFGGGDRDRSSFGGDRRSNYRS

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4557493, Length=95, Percent_Identity=42.1052631578947, Blast_Score=73, Evalue=5e-14,
Organism=Homo sapiens, GI14149675, Length=86, Percent_Identity=43.0232558139535, Blast_Score=73, Evalue=5e-14,
Organism=Homo sapiens, GI188219593, Length=78, Percent_Identity=43.5897435897436, Blast_Score=71, Evalue=2e-13,
Organism=Homo sapiens, GI188219591, Length=78, Percent_Identity=43.5897435897436, Blast_Score=71, Evalue=2e-13,
Organism=Homo sapiens, GI153252068, Length=78, Percent_Identity=39.7435897435897, Blast_Score=70, Evalue=5e-13,
Organism=Homo sapiens, GI56699409, Length=78, Percent_Identity=39.7435897435897, Blast_Score=69, Evalue=7e-13,
Organism=Homo sapiens, GI221139802, Length=77, Percent_Identity=44.1558441558442, Blast_Score=69, Evalue=8e-13,
Organism=Homo sapiens, GI4507499, Length=78, Percent_Identity=43.5897435897436, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI34577105, Length=77, Percent_Identity=44.1558441558442, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI34577107, Length=77, Percent_Identity=44.1558441558442, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI77695912, Length=78, Percent_Identity=43.5897435897436, Blast_Score=68, Evalue=1e-12,
Organism=Homo sapiens, GI242117971, Length=78, Percent_Identity=38.4615384615385, Blast_Score=68, Evalue=1e-12,
Organism=Homo sapiens, GI21361809, Length=78, Percent_Identity=38.4615384615385, Blast_Score=68, Evalue=1e-12,
Organism=Homo sapiens, GI4502847, Length=76, Percent_Identity=40.7894736842105, Blast_Score=68, Evalue=2e-12,
Organism=Homo sapiens, GI223890219, Length=99, Percent_Identity=38.3838383838384, Blast_Score=67, Evalue=2e-12,
Organism=Homo sapiens, GI5803137, Length=76, Percent_Identity=39.4736842105263, Blast_Score=66, Evalue=6e-12,
Organism=Homo sapiens, GI238859597, Length=89, Percent_Identity=38.2022471910112, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI4757926, Length=79, Percent_Identity=35.4430379746835, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI35493811, Length=79, Percent_Identity=35.4430379746835, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI45238849, Length=96, Percent_Identity=37.5, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI116734696, Length=79, Percent_Identity=36.7088607594937, Blast_Score=63, Evalue=4e-11,
Organism=Homo sapiens, GI116734694, Length=79, Percent_Identity=36.7088607594937, Blast_Score=63, Evalue=4e-11,
Organism=Homo sapiens, GI116734698, Length=79, Percent_Identity=36.7088607594937, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI46367787, Length=96, Percent_Identity=37.5, Blast_Score=63, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI193209459, Length=89, Percent_Identity=42.6966292134831, Blast_Score=77, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17553656, Length=74, Percent_Identity=47.2972972972973, Blast_Score=71, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17508587, Length=79, Percent_Identity=39.2405063291139, Blast_Score=66, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17508585, Length=75, Percent_Identity=37.3333333333333, Blast_Score=65, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI212648574, Length=77, Percent_Identity=44.1558441558442, Blast_Score=65, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17569937, Length=77, Percent_Identity=44.1558441558442, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI32564506, Length=89, Percent_Identity=37.0786516853933, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI32564504, Length=89, Percent_Identity=37.0786516853933, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17531963, Length=89, Percent_Identity=37.0786516853933, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17531965, Length=89, Percent_Identity=37.0786516853933, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17508567, Length=75, Percent_Identity=38.6666666666667, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71993203, Length=79, Percent_Identity=39.2405063291139, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71993217, Length=79, Percent_Identity=39.2405063291139, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71993209, Length=79, Percent_Identity=39.2405063291139, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17567131, Length=79, Percent_Identity=36.7088607594937, Blast_Score=62, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6321599, Length=90, Percent_Identity=34.4444444444444, Blast_Score=67, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6324312, Length=79, Percent_Identity=37.9746835443038, Blast_Score=64, Evalue=7e-12,
Organism=Drosophila melanogaster, GI17137710, Length=89, Percent_Identity=42.6966292134831, Blast_Score=72, Evalue=7e-14,
Organism=Drosophila melanogaster, GI19920866, Length=79, Percent_Identity=37.9746835443038, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24582412, Length=79, Percent_Identity=37.9746835443038, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24582417, Length=79, Percent_Identity=37.9746835443038, Blast_Score=69, Evalue=7e-13,
Organism=Drosophila melanogaster, GI45550943, Length=79, Percent_Identity=37.9746835443038, Blast_Score=69, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24582419, Length=79, Percent_Identity=37.9746835443038, Blast_Score=69, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24582423, Length=79, Percent_Identity=37.9746835443038, Blast_Score=69, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24582421, Length=79, Percent_Identity=37.9746835443038, Blast_Score=69, Evalue=7e-13,
Organism=Drosophila melanogaster, GI161078704, Length=78, Percent_Identity=42.3076923076923, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24650782, Length=91, Percent_Identity=37.3626373626374, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI161078702, Length=91, Percent_Identity=37.3626373626374, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI281362714, Length=91, Percent_Identity=37.3626373626374, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24649519, Length=86, Percent_Identity=40.6976744186046, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24649515, Length=86, Percent_Identity=40.6976744186046, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24649517, Length=86, Percent_Identity=40.6976744186046, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24649513, Length=86, Percent_Identity=40.6976744186046, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24654797, Length=79, Percent_Identity=39.2405063291139, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45552715, Length=79, Percent_Identity=39.2405063291139, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24654810, Length=79, Percent_Identity=39.2405063291139, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24654800, Length=79, Percent_Identity=39.2405063291139, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24654793, Length=79, Percent_Identity=39.2405063291139, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24654807, Length=79, Percent_Identity=39.2405063291139, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17136378, Length=79, Percent_Identity=39.2405063291139, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24654804, Length=79, Percent_Identity=39.2405063291139, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 12631; Mature: 12631

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIFVGNLSWKTSEEQLKAHFEAFGKVVSAKIVTDQMTGKSKGFGFVEMESANDAENAI
CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHH
RELNGKPLVDRSLRVSLAQERDRSERREPRSFGGGDRDRSSFGGDRRSNYRS
HHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKIFVGNLSWKTSEEQLKAHFEAFGKVVSAKIVTDQMTGKSKGFGFVEMESANDAENAI
CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHH
RELNGKPLVDRSLRVSLAQERDRSERREPRSFGGGDRDRSSFGGDRRSNYRS
HHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]