| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446522
Identifier: 46446522
GI number: 46446522
Start: 1072205
End: 1074166
Strand: Direct
Name: 46446522
Synonym: pc0888
Alternate gene names: NA
Gene position: 1072205-1074166 (Clockwise)
Preceding gene: 46446521
Following gene: 46446527
Centisome position: 44.41
GC content: 40.06
Gene sequence:
>1962_bases TTGAATATTCCTACTCTAAGTTATAGTTATCTTGTCAATACAATGACCACTTCTGACTATCAATCTCAAGAAATTAGCGA TCTTTCTAGAGATGAAGATATCCCCTTAGGCAATTCTTTGGCAAATATAGAAGAAACTAGTGCACCAACGATTCAAGTTC ACGATTTTTCCTCTTCATCTGAAGAACTTCAACTAAGCTTTCAAGAGGGAACTTCTCTGACTATTTCTCATTCTCAGTTA GCTATGTTAAGGGAAAAATCCCTTTATTTTAAAACTCTTTGGTCAGGAAATTTTCAAGAAACCCTTCAACATCCTCTGGC TTTGACACAAAAGGAGTTTACGCATCTGCTTAATTGTGTCATGGATGCTAATTTTAAAGTTCCTTTGGAAGAGATCACTT CTTCCATTCAACTAGCCGATTATTATGAACTAACAGAAGTGGTGAAAAATTTAGAAGAACAGCTGATTGAGGGATACCGA ACACAGGAATTTGAACCATTTAGTTCCACTGAAGAGAGTTTAGTCGCATTAAAAGAACTTTTAAATTTTGCACATCGCTA TCAATTAAGTACATTGAAGAACTATTTAGAATTGACCGTTGTGAGCGCCTTATTAAATCAGACCTCTCAACTGACGGAGT TTGAAAAAATTATAAAGCACTTCTTAAATGAGATAGAAGCATTTAATTTTTCAGACAATGCTTATTTAACAGATGCCCAT CTTTTAGCATTAAAAGATTGTAAAAATTTAAAAGTACTCCATTTAGAGAAATGTCAGGTTATTACGGACGATGGTTTGGC GCATTTGACACCCTTAACGGCTTTGCAGCATTTAGAATTAAGCGATTGCAGGAAACTCACCGATGCAGGATTAGCTCATT TGACACCCTTAACGGCTTTGCAGCATCTAAATCTAAGCTTTTGCGATAAACTCACCGATGCAGGATTAGCTCATTTGACA CCCTTAACGGCTTTGCAGCATCTAAATCTAAGCAGGTGCTATTATAAACTCACCGATGCAGGATTAGCTCATTTGACACC CTTAACGGCTTTGCAGCATCTAAATCTAAGCTTTTGCGATAAACTCACCGATGCAGGATTAGTCCATTTGAAACTCTTAA CGGGTTTGCAGCATCTAGATCTAAGAGAATTCTGGGAACTTACCGGTGCAGGATTAGCGCATTTAACAACTTTAACCGCT TTGCAGCATCTAGATCTGAGTGGATGCGATAAGCTCACTGACGTAGGATTAGCCCATTTAACACCCTTAACGACTTTGCA GCATCTAGATCTGAAAAGGTGTCGTAATCTCACGAACGCTGGATTAGTCCATTTGAAACTCTTAACGGGTTTGCAGCATC TAAATTTGAGCGAATGCTATCATCTCACCGATGCAGGATTAGCCCATTTGACACCCTTAACCGCTTTGCAGCATCTAGAT CTAAGCCAATGCAGTAAACTCACTGACGATGGATTAGCCCATTTAACACCCTTGACGGCTTTGCAGCATCTAGATCTAAG CCAATGCAGTAAACTCACTGACGATGGATTAGCCCATTTAACACCCTTGACGGCTTTGCAGCATTTAGTTCTGGCTAGGT GCCGTAATCTCACGGACGCTGGATTAGCGCATTTGACACCCTTAGAGACTTTACAACATTTAAATTTGAGTGGAGGCTAT AAGCTCACGGGTGCTGGATTAGCGCATTTGAGGCCCTTAGTGGCTTTACAGCATTTAGATTTGAGCTATTGTAATGGGCT CACGGACGCTGGATTAGCGCATTTGACACCCTTAGTGGCTTTACAGCATTTAGATTTGAGCTATTGTGATGGGCTCACGG ACGCTGGATTAACGCATTTGAGGCCCTTAGTGGCTTTACAGCATTTAGATTTGAGCTATTGTGATGGGCTCACGGACGCT GGATTAGCGCATTTTAAATTCTTAGCAGCTATAATACACTAA
Upstream 100 bases:
>100_bases CCAAAATTCAGATTACTATTGCAATGATTTTTAGCTATATGTAATTTTGTTAAAATATTTATAAATTAAAAAATTTATTT CACTCATTTGGATGGTCATT
Downstream 100 bases:
>100_bases GAAACTTTTTAAGCTTTACCGGGAAATGAACTAAAAGTTAAAAAAAAGCAGCTCGAAGGCGAGGATTTGGGAAAAGGCTT GCGCAGATAAAAGCTTCACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 653; Mature: 653
Protein sequence:
>653_residues MNIPTLSYSYLVNTMTTSDYQSQEISDLSRDEDIPLGNSLANIEETSAPTIQVHDFSSSSEELQLSFQEGTSLTISHSQL AMLREKSLYFKTLWSGNFQETLQHPLALTQKEFTHLLNCVMDANFKVPLEEITSSIQLADYYELTEVVKNLEEQLIEGYR TQEFEPFSSTEESLVALKELLNFAHRYQLSTLKNYLELTVVSALLNQTSQLTEFEKIIKHFLNEIEAFNFSDNAYLTDAH LLALKDCKNLKVLHLEKCQVITDDGLAHLTPLTALQHLELSDCRKLTDAGLAHLTPLTALQHLNLSFCDKLTDAGLAHLT PLTALQHLNLSRCYYKLTDAGLAHLTPLTALQHLNLSFCDKLTDAGLVHLKLLTGLQHLDLREFWELTGAGLAHLTTLTA LQHLDLSGCDKLTDVGLAHLTPLTTLQHLDLKRCRNLTNAGLVHLKLLTGLQHLNLSECYHLTDAGLAHLTPLTALQHLD LSQCSKLTDDGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLARCRNLTDAGLAHLTPLETLQHLNLSGGY KLTGAGLAHLRPLVALQHLDLSYCNGLTDAGLAHLTPLVALQHLDLSYCDGLTDAGLTHLRPLVALQHLDLSYCDGLTDA GLAHFKFLAAIIH
Sequences:
>Translated_653_residues MNIPTLSYSYLVNTMTTSDYQSQEISDLSRDEDIPLGNSLANIEETSAPTIQVHDFSSSSEELQLSFQEGTSLTISHSQL AMLREKSLYFKTLWSGNFQETLQHPLALTQKEFTHLLNCVMDANFKVPLEEITSSIQLADYYELTEVVKNLEEQLIEGYR TQEFEPFSSTEESLVALKELLNFAHRYQLSTLKNYLELTVVSALLNQTSQLTEFEKIIKHFLNEIEAFNFSDNAYLTDAH LLALKDCKNLKVLHLEKCQVITDDGLAHLTPLTALQHLELSDCRKLTDAGLAHLTPLTALQHLNLSFCDKLTDAGLAHLT PLTALQHLNLSRCYYKLTDAGLAHLTPLTALQHLNLSFCDKLTDAGLVHLKLLTGLQHLDLREFWELTGAGLAHLTTLTA LQHLDLSGCDKLTDVGLAHLTPLTTLQHLDLKRCRNLTNAGLVHLKLLTGLQHLNLSECYHLTDAGLAHLTPLTALQHLD LSQCSKLTDDGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLARCRNLTDAGLAHLTPLETLQHLNLSGGY KLTGAGLAHLRPLVALQHLDLSYCNGLTDAGLAHLTPLVALQHLDLSYCDGLTDAGLTHLRPLVALQHLDLSYCDGLTDA GLAHFKFLAAIIH >Mature_653_residues MNIPTLSYSYLVNTMTTSDYQSQEISDLSRDEDIPLGNSLANIEETSAPTIQVHDFSSSSEELQLSFQEGTSLTISHSQL AMLREKSLYFKTLWSGNFQETLQHPLALTQKEFTHLLNCVMDANFKVPLEEITSSIQLADYYELTEVVKNLEEQLIEGYR TQEFEPFSSTEESLVALKELLNFAHRYQLSTLKNYLELTVVSALLNQTSQLTEFEKIIKHFLNEIEAFNFSDNAYLTDAH LLALKDCKNLKVLHLEKCQVITDDGLAHLTPLTALQHLELSDCRKLTDAGLAHLTPLTALQHLNLSFCDKLTDAGLAHLT PLTALQHLNLSRCYYKLTDAGLAHLTPLTALQHLNLSFCDKLTDAGLVHLKLLTGLQHLDLREFWELTGAGLAHLTTLTA LQHLDLSGCDKLTDVGLAHLTPLTTLQHLDLKRCRNLTNAGLVHLKLLTGLQHLNLSECYHLTDAGLAHLTPLTALQHLD LSQCSKLTDDGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLARCRNLTDAGLAHLTPLETLQHLNLSGGY KLTGAGLAHLRPLVALQHLDLSYCNGLTDAGLAHLTPLVALQHLDLSYCDGLTDAGLTHLRPLVALQHLDLSYCDGLTDA GLAHFKFLAAIIH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI22748931, Length=342, Percent_Identity=32.7485380116959, Blast_Score=135, Evalue=9e-32, Organism=Homo sapiens, GI284447308, Length=310, Percent_Identity=34.5161290322581, Blast_Score=120, Evalue=6e-27, Organism=Homo sapiens, GI161333852, Length=467, Percent_Identity=25.4817987152034, Blast_Score=119, Evalue=1e-26, Organism=Homo sapiens, GI161333854, Length=473, Percent_Identity=25.1585623678647, Blast_Score=104, Evalue=3e-22, Organism=Homo sapiens, GI6912466, Length=296, Percent_Identity=29.7297297297297, Blast_Score=101, Evalue=2e-21, Organism=Homo sapiens, GI27734755, Length=435, Percent_Identity=27.5862068965517, Blast_Score=99, Evalue=1e-20, Organism=Homo sapiens, GI296531375, Length=258, Percent_Identity=32.1705426356589, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI289666746, Length=403, Percent_Identity=28.5359801488834, Blast_Score=84, Evalue=4e-16, Organism=Homo sapiens, GI284447314, Length=295, Percent_Identity=29.8305084745763, Blast_Score=80, Evalue=4e-15, Organism=Homo sapiens, GI16306588, Length=293, Percent_Identity=30.7167235494881, Blast_Score=77, Evalue=8e-14, Organism=Caenorhabditis elegans, GI25151694, Length=333, Percent_Identity=27.9279279279279, Blast_Score=95, Evalue=1e-19, Organism=Caenorhabditis elegans, GI25151696, Length=333, Percent_Identity=27.9279279279279, Blast_Score=94, Evalue=2e-19, Organism=Saccharomyces cerevisiae, GI6322549, Length=408, Percent_Identity=28.921568627451, Blast_Score=94, Evalue=7e-20, Organism=Drosophila melanogaster, GI17647819, Length=301, Percent_Identity=35.5481727574751, Blast_Score=135, Evalue=1e-31, Organism=Drosophila melanogaster, GI24662818, Length=327, Percent_Identity=32.7217125382263, Blast_Score=101, Evalue=1e-21, Organism=Drosophila melanogaster, GI161076545, Length=314, Percent_Identity=31.2101910828025, Blast_Score=93, Evalue=6e-19, Organism=Drosophila melanogaster, GI24652783, Length=314, Percent_Identity=30.8917197452229, Blast_Score=92, Evalue=1e-18, Organism=Drosophila melanogaster, GI161076547, Length=314, Percent_Identity=30.8917197452229, Blast_Score=92, Evalue=1e-18, Organism=Drosophila melanogaster, GI161076549, Length=314, Percent_Identity=30.8917197452229, Blast_Score=92, Evalue=1e-18, Organism=Drosophila melanogaster, GI21357913, Length=227, Percent_Identity=32.15859030837, Blast_Score=80, Evalue=4e-15, Organism=Drosophila melanogaster, GI19921840, Length=392, Percent_Identity=25.765306122449, Blast_Score=79, Evalue=7e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 72230; Mature: 72230
Theoretical pI: Translated: 5.82; Mature: 5.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIPTLSYSYLVNTMTTSDYQSQEISDLSRDEDIPLGNSLANIEETSAPTIQVHDFSSSS CCCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC EELQLSFQEGTSLTISHSQLAMLREKSLYFKTLWSGNFQETLQHPLALTQKEFTHLLNCV CCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH MDANFKVPLEEITSSIQLADYYELTEVVKNLEEQLIEGYRTQEFEPFSSTEESLVALKEL HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH LNFAHRYQLSTLKNYLELTVVSALLNQTSQLTEFEKIIKHFLNEIEAFNFSDNAYLTDAH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECHHH LLALKDCKNLKVLHLEKCQVITDDGLAHLTPLTALQHLELSDCRKLTDAGLAHLTPLTAL HHHHHCCCCCEEEEECCCEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHH QHLNLSFCDKLTDAGLAHLTPLTALQHLNLSRCYYKLTDAGLAHLTPLTALQHLNLSFCD HHCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHH KLTDAGLVHLKLLTGLQHLDLREFWELTGAGLAHLTTLTALQHLDLSGCDKLTDVGLAHL HHHCCCHHHHHHHHCCHHCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHH TPLTTLQHLDLKRCRNLTNAGLVHLKLLTGLQHLNLSECYHLTDAGLAHLTPLTALQHLD HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHCC LSQCSKLTDDGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLARCRNLTDA HHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC GLAHLTPLETLQHLNLSGGYKLTGAGLAHLRPLVALQHLDLSYCNGLTDAGLAHLTPLVA CHHHCCHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHH LQHLDLSYCDGLTDAGLTHLRPLVALQHLDLSYCDGLTDAGLAHFKFLAAIIH HHHCCHHHHCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHC >Mature Secondary Structure MNIPTLSYSYLVNTMTTSDYQSQEISDLSRDEDIPLGNSLANIEETSAPTIQVHDFSSSS CCCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC EELQLSFQEGTSLTISHSQLAMLREKSLYFKTLWSGNFQETLQHPLALTQKEFTHLLNCV CCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH MDANFKVPLEEITSSIQLADYYELTEVVKNLEEQLIEGYRTQEFEPFSSTEESLVALKEL HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH LNFAHRYQLSTLKNYLELTVVSALLNQTSQLTEFEKIIKHFLNEIEAFNFSDNAYLTDAH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECHHH LLALKDCKNLKVLHLEKCQVITDDGLAHLTPLTALQHLELSDCRKLTDAGLAHLTPLTAL HHHHHCCCCCEEEEECCCEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHH QHLNLSFCDKLTDAGLAHLTPLTALQHLNLSRCYYKLTDAGLAHLTPLTALQHLNLSFCD HHCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHH KLTDAGLVHLKLLTGLQHLDLREFWELTGAGLAHLTTLTALQHLDLSGCDKLTDVGLAHL HHHCCCHHHHHHHHCCHHCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHH TPLTTLQHLDLKRCRNLTNAGLVHLKLLTGLQHLNLSECYHLTDAGLAHLTPLTALQHLD HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHCC LSQCSKLTDDGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLARCRNLTDA HHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC GLAHLTPLETLQHLNLSGGYKLTGAGLAHLRPLVALQHLDLSYCNGLTDAGLAHLTPLVA CHHHCCHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHH LQHLDLSYCDGLTDAGLTHLRPLVALQHLDLSYCDGLTDAGLAHFKFLAAIIH HHHCCHHHHCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA