| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446482
Identifier: 46446482
GI number: 46446482
Start: 1031596
End: 1032087
Strand: Reverse
Name: 46446482
Synonym: pc0848
Alternate gene names: NA
Gene position: 1032087-1031596 (Counterclockwise)
Preceding gene: 46446484
Following gene: 46446481
Centisome position: 42.75
GC content: 43.5
Gene sequence:
>492_bases ATGCCCCTCTTGTACGTCAGATTGGATCAAAAAAAAGGTCATATCCACAACGGAAAACAGAAATATCAGTGTTTGGCATG TGGAAGACAGTTTGTGCTTAACCCATCCCAGAAAATCATTGACGAAAGAACCAGGCTTTTGACCAAGAAGACTCTATTAG AGTGCATTGCTCTTGAAGGAGTATGTTGGGTATTTGACGTCAGTATGCCTTGGCTTTTGGAATTCATAGGGGAGCTGACC AAAGAGCTGCCAGAAAACTTGAATGCGGAAGTAGTGTCAGAAAATGATGAGCTTGAAGTAGTTGTACTTGAAGTAGATGA ATTGTGGAGCTACGTCGGCTCGAAGGCCAACCCACAATGGTTATGGTTAGTAATGCACTCTAAAACGCGACAGGTGGTTG CCATGCAAATAGGGCCTCGAAATAAAGAGACCGCAGAGAAGTTGCTCTACAAGCTACCCACACCGTTAAAAAAAAGCCGA GTACTATACTGA
Upstream 100 bases:
>100_bases CTGGTAGCCCTAAATATGTAGTGCTAAACGGTTAAAGAAAATATTGGGTAAGTGCATAATAGGCGGCGTCTTTTAAAATG GAGTCACCTATGGAATGTAT
Downstream 100 bases:
>100_bases CTTCTTCGCTGTGTACTTTGAGAGCATCCCATTTGGACAACATAGACCGGTTGGCAAACAATCAGATAAAACATCTTATA TTGAAAGACTTAATTGCACC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 163; Mature: 162
Protein sequence:
>163_residues MPLLYVRLDQKKGHIHNGKQKYQCLACGRQFVLNPSQKIIDERTRLLTKKTLLECIALEGVCWVFDVSMPWLLEFIGELT KELPENLNAEVVSENDELEVVVLEVDELWSYVGSKANPQWLWLVMHSKTRQVVAMQIGPRNKETAEKLLYKLPTPLKKSR VLY
Sequences:
>Translated_163_residues MPLLYVRLDQKKGHIHNGKQKYQCLACGRQFVLNPSQKIIDERTRLLTKKTLLECIALEGVCWVFDVSMPWLLEFIGELT KELPENLNAEVVSENDELEVVVLEVDELWSYVGSKANPQWLWLVMHSKTRQVVAMQIGPRNKETAEKLLYKLPTPLKKSR VLY >Mature_162_residues PLLYVRLDQKKGHIHNGKQKYQCLACGRQFVLNPSQKIIDERTRLLTKKTLLECIALEGVCWVFDVSMPWLLEFIGELTK ELPENLNAEVVSENDELEVVVLEVDELWSYVGSKANPQWLWLVMHSKTRQVVAMQIGPRNKETAEKLLYKLPTPLKKSRV LY
Specific function: Unknown
COG id: COG1662
COG function: function code L; Transposase and inactivated derivatives, IS1 family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18921; Mature: 18790
Theoretical pI: Translated: 8.31; Mature: 8.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLLYVRLDQKKGHIHNGKQKYQCLACGRQFVLNPSQKIIDERTRLLTKKTLLECIALEG CCEEEEEECCCCCCCCCCHHHHHHHHHCHHHEECCHHHHHHHHHHHHHHHHHHHHHHHCC VCWVFDVSMPWLLEFIGELTKELPENLNAEVVSENDELEVVVLEVDELWSYVGSKANPQW EEEEEECCHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEEHHHHHHHHCCCCCCCE LWLVMHSKTRQVVAMQIGPRNKETAEKLLYKLPTPLKKSRVLY EEEEEECCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure PLLYVRLDQKKGHIHNGKQKYQCLACGRQFVLNPSQKIIDERTRLLTKKTLLECIALEG CEEEEEECCCCCCCCCCHHHHHHHHHCHHHEECCHHHHHHHHHHHHHHHHHHHHHHHCC VCWVFDVSMPWLLEFIGELTKELPENLNAEVVSENDELEVVVLEVDELWSYVGSKANPQW EEEEEECCHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEEHHHHHHHHCCCCCCCE LWLVMHSKTRQVVAMQIGPRNKETAEKLLYKLPTPLKKSRVLY EEEEEECCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA