| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446463
Identifier: 46446463
GI number: 46446463
Start: 1014121
End: 1015431
Strand: Reverse
Name: 46446463
Synonym: pc0829
Alternate gene names: NA
Gene position: 1015431-1014121 (Counterclockwise)
Preceding gene: 46446465
Following gene: 46446459
Centisome position: 42.06
GC content: 34.32
Gene sequence:
>1311_bases ATGAATGAATTACCTTTTTTTACAACTATTTGTTATGATAAAAATCCAGAATTTATTGGAAAGCGTCTGCTCGAAAAGGT CGACGCATATTTCTATCTAGGAGGCAAAAAAGCGTCAGTTATTCCAGGACATACTAAAGGTAATGTCGAAGGGGTAAAAT TTATAAATAGTTCTTCTTCCTACTTAATTACTAGTCTAAAAGTGGCTTCGTACTGCACCATTCTAATTCCAGCAATCATG CTAGCCGCCAAAATGTTTTTGAGGTCTATTTATAAATTTTACCTTGTCAATCCAGAAACACCAATTGACAATCAAGAATT ATTATCGGTCAATCAAAAGCAAATTATCGAATCATTCTGGAAAGAACATATTGCCTCCTTTAAAGTCTGCCATGGAACAA CTTCCCTACTTCTTAAACATTTCACAGAATATGGAATAAGTTCAACCTATCCCCCAGCTCTCCATGACATGATCACTAAA GTTAGAGCGGTTTGGAAAAATCATGAATACGATATTCTACCACGTTCAGGCTATTTCAAAAACTTCGAAAGAAGATATGA TGACGCACATCTAAAACAACAAATTGCTGTTTCGTTTACTGCGGATCCTTTTAGGCAAAAGGAATACACAGTAGGAGCAA GAGGATATGGCGGAGAATGGATTAGAGAATTAAATCAATTTATCTATGAAGCTAAGCAGGCAAATAGAAAAGATCTCCTT ACCTCTGAAGAGAAACAAATCGTCATGGAAATGCAGTCTTTAATAGAAGTTATGCAGCGTATTGCACCTATGAAGGTTAA AGTGCCATATTATATGATATCTAGACAGAAAGAATTTTGTTCATTTCAAGAATTTGAAAGCAGAGTGAAAAGTGAGTGTT TAGAATGGCAAAGCCCGGAAAAACTCTCTGCATATCTACATACTGTGTCACTTCCTCAACTAAATGACCAAAAGAAGATA ATAGAAAATAAATATGAGATAACTGTGTATAAAACAATACACCCGAAACATCTGGAATTTGAACTCATTGATTCTACAAC CGCTTTCAATTATCCAATGCTAGATTTTAATAAGCCTGAAGAACTATCATCATCGCAAACCGGTAAACTTCGCATTCGGC TCGATACATTATGTAGTGAATTAGAAGAATACCAAGACTCAATATTTGAATGTACGCCGACAGACCGTCAAACATACATT GTTACAAGAAAAGAAAGATGGTTAAACGAAAAAGAGAAAAAATCTGTCGAATTATCTAAGAAAAAATTTGCTGCACATAA ATTATGGTTACAAAAATTTAATTTGAGTTAA
Upstream 100 bases:
>100_bases TGGATTAAAAAATTTATTTAATTTTCTATATATTGCAAAATAACTTATATTTATATACAATTTTTTCAACTAAATTAATA TAATATATTAGATTAATATT
Downstream 100 bases:
>100_bases CTTTAAAAGAATTTTTATCATCCTTACTAAACCTTCTGAACCAGTTAATCTAGCAAATATTTTTCCTAAAATAATACCTT TTGGTAGAATATAGAATTAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 436; Mature: 436
Protein sequence:
>436_residues MNELPFFTTICYDKNPEFIGKRLLEKVDAYFYLGGKKASVIPGHTKGNVEGVKFINSSSSYLITSLKVASYCTILIPAIM LAAKMFLRSIYKFYLVNPETPIDNQELLSVNQKQIIESFWKEHIASFKVCHGTTSLLLKHFTEYGISSTYPPALHDMITK VRAVWKNHEYDILPRSGYFKNFERRYDDAHLKQQIAVSFTADPFRQKEYTVGARGYGGEWIRELNQFIYEAKQANRKDLL TSEEKQIVMEMQSLIEVMQRIAPMKVKVPYYMISRQKEFCSFQEFESRVKSECLEWQSPEKLSAYLHTVSLPQLNDQKKI IENKYEITVYKTIHPKHLEFELIDSTTAFNYPMLDFNKPEELSSSQTGKLRIRLDTLCSELEEYQDSIFECTPTDRQTYI VTRKERWLNEKEKKSVELSKKKFAAHKLWLQKFNLS
Sequences:
>Translated_436_residues MNELPFFTTICYDKNPEFIGKRLLEKVDAYFYLGGKKASVIPGHTKGNVEGVKFINSSSSYLITSLKVASYCTILIPAIM LAAKMFLRSIYKFYLVNPETPIDNQELLSVNQKQIIESFWKEHIASFKVCHGTTSLLLKHFTEYGISSTYPPALHDMITK VRAVWKNHEYDILPRSGYFKNFERRYDDAHLKQQIAVSFTADPFRQKEYTVGARGYGGEWIRELNQFIYEAKQANRKDLL TSEEKQIVMEMQSLIEVMQRIAPMKVKVPYYMISRQKEFCSFQEFESRVKSECLEWQSPEKLSAYLHTVSLPQLNDQKKI IENKYEITVYKTIHPKHLEFELIDSTTAFNYPMLDFNKPEELSSSQTGKLRIRLDTLCSELEEYQDSIFECTPTDRQTYI VTRKERWLNEKEKKSVELSKKKFAAHKLWLQKFNLS >Mature_436_residues MNELPFFTTICYDKNPEFIGKRLLEKVDAYFYLGGKKASVIPGHTKGNVEGVKFINSSSSYLITSLKVASYCTILIPAIM LAAKMFLRSIYKFYLVNPETPIDNQELLSVNQKQIIESFWKEHIASFKVCHGTTSLLLKHFTEYGISSTYPPALHDMITK VRAVWKNHEYDILPRSGYFKNFERRYDDAHLKQQIAVSFTADPFRQKEYTVGARGYGGEWIRELNQFIYEAKQANRKDLL TSEEKQIVMEMQSLIEVMQRIAPMKVKVPYYMISRQKEFCSFQEFESRVKSECLEWQSPEKLSAYLHTVSLPQLNDQKKI IENKYEITVYKTIHPKHLEFELIDSTTAFNYPMLDFNKPEELSSSQTGKLRIRLDTLCSELEEYQDSIFECTPTDRQTYI VTRKERWLNEKEKKSVELSKKKFAAHKLWLQKFNLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51123; Mature: 51123
Theoretical pI: Translated: 8.83; Mature: 8.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNELPFFTTICYDKNPEFIGKRLLEKVDAYFYLGGKKASVIPGHTKGNVEGVKFINSSSS CCCCCEEEEEEECCCHHHHHHHHHHHHHHEEEECCCCCEECCCCCCCCCCCEEEECCCCC YLITSLKVASYCTILIPAIMLAAKMFLRSIYKFYLVNPETPIDNQELLSVNQKQIIESFW EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHCCCHHHHHHHHH KEHIASFKVCHGTTSLLLKHFTEYGISSTYPPALHDMITKVRAVWKNHEYDILPRSGYFK HHHHHCEEHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCHH NFERRYDDAHLKQQIAVSFTADPFRQKEYTVGARGYGGEWIRELNQFIYEAKQANRKDLL HHHHHCCHHHHHHHHHEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCHHHCC TSEEKQIVMEMQSLIEVMQRIAPMKVKVPYYMISRQKEFCSFQEFESRVKSECLEWQSPE CCHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCH KLSAYLHTVSLPQLNDQKKIIENKYEITVYKTIHPKHLEFELIDSTTAFNYPMLDFNKPE HHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCH ELSSSQTGKLRIRLDTLCSELEEYQDSIFECTPTDRQTYIVTRKERWLNEKEKKSVELSK HCCCCCCCEEEEEHHHHHHHHHHHHHHHEECCCCCCEEEEEECHHHHCCHHHHHHHHHHH KKFAAHKLWLQKFNLS HHHHHHHHHHHHHCCC >Mature Secondary Structure MNELPFFTTICYDKNPEFIGKRLLEKVDAYFYLGGKKASVIPGHTKGNVEGVKFINSSSS CCCCCEEEEEEECCCHHHHHHHHHHHHHHEEEECCCCCEECCCCCCCCCCCEEEECCCCC YLITSLKVASYCTILIPAIMLAAKMFLRSIYKFYLVNPETPIDNQELLSVNQKQIIESFW EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHCCCHHHHHHHHH KEHIASFKVCHGTTSLLLKHFTEYGISSTYPPALHDMITKVRAVWKNHEYDILPRSGYFK HHHHHCEEHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCHH NFERRYDDAHLKQQIAVSFTADPFRQKEYTVGARGYGGEWIRELNQFIYEAKQANRKDLL HHHHHCCHHHHHHHHHEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCHHHCC TSEEKQIVMEMQSLIEVMQRIAPMKVKVPYYMISRQKEFCSFQEFESRVKSECLEWQSPE CCHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCH KLSAYLHTVSLPQLNDQKKIIENKYEITVYKTIHPKHLEFELIDSTTAFNYPMLDFNKPE HHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCH ELSSSQTGKLRIRLDTLCSELEEYQDSIFECTPTDRQTYIVTRKERWLNEKEKKSVELSK HCCCCCCCEEEEEHHHHHHHHHHHHHHHEECCCCCCEEEEEECHHHHCCHHHHHHHHHHH KKFAAHKLWLQKFNLS HHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA