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The map label for this gene is rbfA

Identifier: 46446394

GI number: 46446394

Start: 937515

End: 937910

Strand: Reverse

Name: rbfA

Synonym: pc0760

Alternate gene names: 46446394

Gene position: 937910-937515 (Counterclockwise)

Preceding gene: 46446395

Following gene: 46446393

Centisome position: 38.85

GC content: 38.89

Gene sequence:

>396_bases
ATGGCTATTCAGCGAACAGACAGACTCAACTCCCTATTAAAAGAAGTTATTTCAGAGGTCATTAGACGTGACGTGCGGAA
TCCGTACGTCACGGAACTTGTCACAGTGACTCGTGTTCAAATTTCAAGAGATTTACGATATGCGAAAGTATTTATCAGTA
TTATTGGATCTGAGCAAGCGAAAGTGGAAACGATTGAAGCTTTAAATTCTGCTGCTGGATTTATTGCAGTTAATGCTTCA
CAAAAAGTTGTTATGCGCTATTTTCCAGAGCTTAATTTTAAATTAGATGATAGCGTTGATAAACACATGCGCATTGAAGA
ATTACTTGGAAAAATCACAAAAGAAAGAGAGTCCCGCCAAGGAGACAATAGTGACCAGCTTGAACAGGAGCCTTAG

Upstream 100 bases:

>100_bases
TCGAGTGTGGTATTCTTCTTAATAACTTCACAGATATTCTTGAAGGAGATATCATTGAAGCTTATGACATTACTTATATA
TCTCAAGAGTTATAAAAAAA

Downstream 100 bases:

>100_bases
CACTCCTCCTTCTCATTTAGAAGGAATTCTACTTATCAATAAACCTAAGGGTAAAACATCCTTTAGCCTTGTTAGAGATC
TTCGCAAAAGACTTGGAGTA

Product: putative ribosome binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MAIQRTDRLNSLLKEVISEVIRRDVRNPYVTELVTVTRVQISRDLRYAKVFISIIGSEQAKVETIEALNSAAGFIAVNAS
QKVVMRYFPELNFKLDDSVDKHMRIEELLGKITKERESRQGDNSDQLEQEP

Sequences:

>Translated_131_residues
MAIQRTDRLNSLLKEVISEVIRRDVRNPYVTELVTVTRVQISRDLRYAKVFISIIGSEQAKVETIEALNSAAGFIAVNAS
QKVVMRYFPELNFKLDDSVDKHMRIEELLGKITKERESRQGDNSDQLEQEP
>Mature_130_residues
AIQRTDRLNSLLKEVISEVIRRDVRNPYVTELVTVTRVQISRDLRYAKVFISIIGSEQAKVETIEALNSAAGFIAVNASQ
KVVMRYFPELNFKLDDSVDKHMRIEELLGKITKERESRQGDNSDQLEQEP

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=126, Percent_Identity=31.7460317460317, Blast_Score=70, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_PARUW (Q6MD65)

Other databases:

- EMBL:   BX908798
- RefSeq:   YP_007759.1
- ProteinModelPortal:   Q6MD65
- SMR:   Q6MD65
- STRING:   Q6MD65
- GeneID:   2779677
- GenomeReviews:   BX908798_GR
- KEGG:   pcu:pc0760
- NMPDR:   fig|264201.1.peg.760
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   APEIRFY
- PhylomeDB:   Q6MD65
- ProtClustDB:   CLSK2762249
- BioCyc:   CPRO264201:PC0760-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15051; Mature: 14920

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIQRTDRLNSLLKEVISEVIRRDVRNPYVTELVTVTRVQISRDLRYAKVFISIIGSEQA
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
KVETIEALNSAAGFIAVNASQKVVMRYFPELNFKLDDSVDKHMRIEELLGKITKERESRQ
HHHHHHHHHHCCCEEEECCCHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCC
GDNSDQLEQEP
CCCCCCCCCCC
>Mature Secondary Structure 
AIQRTDRLNSLLKEVISEVIRRDVRNPYVTELVTVTRVQISRDLRYAKVFISIIGSEQA
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
KVETIEALNSAAGFIAVNASQKVVMRYFPELNFKLDDSVDKHMRIEELLGKITKERESRQ
HHHHHHHHHHCCCEEEECCCHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCC
GDNSDQLEQEP
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA