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The map label for this gene is xseB

Identifier: 46446254

GI number: 46446254

Start: 761582

End: 761860

Strand: Reverse

Name: xseB

Synonym: pc0620

Alternate gene names: 46446254

Gene position: 761860-761582 (Counterclockwise)

Preceding gene: 46446255

Following gene: 46446253

Centisome position: 31.55

GC content: 34.05

Gene sequence:

>279_bases
GTGAATAATCCATCTGATCAAGAACCTACTGCTAGCTTTGAAACAGCTTTATGCCGCTTAGAAGAAATACTTGAAAAGAT
GAATAGCGGTACAGTAAGCCTTGATGAATCTCTTAAACTTTATGAAGAAGCTGATCAGTTAATAATAATTTGCAATAAAC
GATTAAATGATGCTGAACGAAAAATAGAGATTCTAGTCAAAAACCGTAGTGGTGAATTAACACTAGGAAACGACGACAAA
CCTATCATTCAAGATTTTAAGATCGCTTCAACCTCTTAA

Upstream 100 bases:

>100_bases
TTCGTTATAAATTCAATATGTAAACTTAAAAAAGGGCAAAAAGCCAAGCTCTTATTATCTGACGGCGAAGCCTTAATCAC
TATCAACGAAGTGAATCCTC

Downstream 100 bases:

>100_bases
TTTATCTTTTTATTGCAGTCTTCCGTCTTAGAATGTCAATAAAAACTTTTTGAGAGATGACTTTTTAATTAAGTGACTAT
AAAGGATTTTGAATGACACA

Product: putative exodeoxyribonuclease VII, small chain

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 92; Mature: 92

Protein sequence:

>92_residues
MNNPSDQEPTASFETALCRLEEILEKMNSGTVSLDESLKLYEEADQLIIICNKRLNDAERKIEILVKNRSGELTLGNDDK
PIIQDFKIASTS

Sequences:

>Translated_92_residues
MNNPSDQEPTASFETALCRLEEILEKMNSGTVSLDESLKLYEEADQLIIICNKRLNDAERKIEILVKNRSGELTLGNDDK
PIIQDFKIASTS
>Mature_92_residues
MNNPSDQEPTASFETALCRLEEILEKMNSGTVSLDESLKLYEEADQLIIICNKRLNDAERKIEILVKNRSGELTLGNDDK
PIIQDFKIASTS

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_PARUW (Q6MDK5)

Other databases:

- EMBL:   BX908798
- RefSeq:   YP_007619.1
- ProteinModelPortal:   Q6MDK5
- SMR:   Q6MDK5
- STRING:   Q6MDK5
- GeneID:   2780266
- GenomeReviews:   BX908798_GR
- KEGG:   pcu:pc0620
- NMPDR:   fig|264201.1.peg.620
- eggNOG:   NOG87517
- HOGENOM:   HBG728416
- OMA:   CESRIRK
- ProtClustDB:   CLSK2762202
- BioCyc:   CPRO264201:PC0620-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 10357; Mature: 10357

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNPSDQEPTASFETALCRLEEILEKMNSGTVSLDESLKLYEEADQLIIICNKRLNDAER
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCEEEEEECCCCCCHHH
KIEILVKNRSGELTLGNDDKPIIQDFKIASTS
EEEEEEECCCCCEEECCCCCCCHHCEEECCCC
>Mature Secondary Structure
MNNPSDQEPTASFETALCRLEEILEKMNSGTVSLDESLKLYEEADQLIIICNKRLNDAER
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCEEEEEECCCCCCHHH
KIEILVKNRSGELTLGNDDKPIIQDFKIASTS
EEEEEEECCCCCEEECCCCCCCHHCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA