| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446116
Identifier: 46446116
GI number: 46446116
Start: 619866
End: 621161
Strand: Reverse
Name: 46446116
Synonym: pc0482
Alternate gene names: NA
Gene position: 621161-619866 (Counterclockwise)
Preceding gene: 46446117
Following gene: 46446115
Centisome position: 25.73
GC content: 34.49
Gene sequence:
>1296_bases ATGATGAGGAAACCAGCTCCCTCCATATTAAGCTTTTTATCTTTATTGATTCCGCTTAGCTCATCTTTATTAGCCGATGA AAATCAAGCGGAAGTCAACATTCAACATACCCAAAATTTTTCTCCGTCTTTAGAAAAAGCTGAAAAAAAAATAGCTCCAT TTGAGCCATTCACTGGTAAAATCACTAAAAATAAGGTGAGATTACGCCTACATCCCACTTACGATGGCTACGTTCTACGT GAATACAATCAAAATGATCTACTCGTTATTAATGGAGAGACGGAAGATTTTTATACTGCCCAACCCCCTAAAGATATCAA AGGATTTGTGTTTAGAACCTACATCTTGGATAATATTGTGGAAGGGTCCCGGGTTAACGTAAGATTACAGCCAGATCTAG AGTCTCCTGTTATCGCCCAGCTTAATTCAGGCGATAAAGTGGAAGGTGTTATTAGCTCTACTAATAATAAATGGCTTGAG ATTACTATTCCACAAACAGCACAATTTTATATTGCTAAAGAATATGTTGAAAAAATTGGAGATGCTGGTTTAATGGCTCG CCAAGAGAAACGAAAAGAAGACGTTTATCGCTTATTAGCCAATACAGAATCTTTAAGTCGCCTTGAAATGGCAAAGCCAT TTGATCAATTTAATGTAGAAAGAATTAAATCAAATTATCAAGCAATTATTAATAATTATACTGATTTTCCAGATGCGGTC GCAAAAGCTAAAGAACTTTTAGCTAAATTACAAGAAGCGTTCATTACAAAAAAATTAGCTTATTTAGAAGCCCAAAATGG CTATTCTTCTCATATTCTAGAAGCTAAAAACAAACAATTAACAGAAGAATTAAATGCTCATAAAACTAAACTAGCAAGCC TTGAGCAGAAAGGAGGAAGTGAAAAACTTTCTAACTCTAGTATATCACAAGCAAATCCCGCTCGAAAAACAGCTCAGCTT CCTATGAACATGGCTATTTGGTTACCAATTGAAGAAGCCTTATTTAATGATTGGGTAAAACATTCTGGAAGTGAAAATCC ACAAGCTTTTTATGAAGAGCAAAAGCAACATTCGTTTATTTTAAAAGGAATTGTAGATGCCTATAATCGACCTGTCAAAA ATAAACCTGGTGATTATATGTTAATTAATTCTGCAAGTAAATTACCGATTGCTTTTCTTTATAGTACACAAGTAAATTTA CAAGATTTCATTGGTCACGAAGTATCTATTCGCGTTGCCCCAAGACCCAATAATCATTATGCTTTCCCTGCGTACTATGT TTTATCTCTTGAGTAA
Upstream 100 bases:
>100_bases ATAGCACAAATCCCTTTCTAAATGCTTTGCATAAATCTTTCAAAACTTTAGAATTCTTTATCAGTTATCATTTTTAACAT GTTTTATTGTGAGGATCTAT
Downstream 100 bases:
>100_bases ACATGGAATTGCGTGAATGGGCTCATTCAATTTTAGCCTCAGACACCTTAGAAGGCAAACTGGCTCATCCTTCCGTTCTA ACGGATTGTGAACCAGGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 431; Mature: 431
Protein sequence:
>431_residues MMRKPAPSILSFLSLLIPLSSSLLADENQAEVNIQHTQNFSPSLEKAEKKIAPFEPFTGKITKNKVRLRLHPTYDGYVLR EYNQNDLLVINGETEDFYTAQPPKDIKGFVFRTYILDNIVEGSRVNVRLQPDLESPVIAQLNSGDKVEGVISSTNNKWLE ITIPQTAQFYIAKEYVEKIGDAGLMARQEKRKEDVYRLLANTESLSRLEMAKPFDQFNVERIKSNYQAIINNYTDFPDAV AKAKELLAKLQEAFITKKLAYLEAQNGYSSHILEAKNKQLTEELNAHKTKLASLEQKGGSEKLSNSSISQANPARKTAQL PMNMAIWLPIEEALFNDWVKHSGSENPQAFYEEQKQHSFILKGIVDAYNRPVKNKPGDYMLINSASKLPIAFLYSTQVNL QDFIGHEVSIRVAPRPNNHYAFPAYYVLSLE
Sequences:
>Translated_431_residues MMRKPAPSILSFLSLLIPLSSSLLADENQAEVNIQHTQNFSPSLEKAEKKIAPFEPFTGKITKNKVRLRLHPTYDGYVLR EYNQNDLLVINGETEDFYTAQPPKDIKGFVFRTYILDNIVEGSRVNVRLQPDLESPVIAQLNSGDKVEGVISSTNNKWLE ITIPQTAQFYIAKEYVEKIGDAGLMARQEKRKEDVYRLLANTESLSRLEMAKPFDQFNVERIKSNYQAIINNYTDFPDAV AKAKELLAKLQEAFITKKLAYLEAQNGYSSHILEAKNKQLTEELNAHKTKLASLEQKGGSEKLSNSSISQANPARKTAQL PMNMAIWLPIEEALFNDWVKHSGSENPQAFYEEQKQHSFILKGIVDAYNRPVKNKPGDYMLINSASKLPIAFLYSTQVNL QDFIGHEVSIRVAPRPNNHYAFPAYYVLSLE >Mature_431_residues MMRKPAPSILSFLSLLIPLSSSLLADENQAEVNIQHTQNFSPSLEKAEKKIAPFEPFTGKITKNKVRLRLHPTYDGYVLR EYNQNDLLVINGETEDFYTAQPPKDIKGFVFRTYILDNIVEGSRVNVRLQPDLESPVIAQLNSGDKVEGVISSTNNKWLE ITIPQTAQFYIAKEYVEKIGDAGLMARQEKRKEDVYRLLANTESLSRLEMAKPFDQFNVERIKSNYQAIINNYTDFPDAV AKAKELLAKLQEAFITKKLAYLEAQNGYSSHILEAKNKQLTEELNAHKTKLASLEQKGGSEKLSNSSISQANPARKTAQL PMNMAIWLPIEEALFNDWVKHSGSENPQAFYEEQKQHSFILKGIVDAYNRPVKNKPGDYMLINSASKLPIAFLYSTQVNL QDFIGHEVSIRVAPRPNNHYAFPAYYVLSLE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48907; Mature: 48907
Theoretical pI: Translated: 7.89; Mature: 7.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRKPAPSILSFLSLLIPLSSSLLADENQAEVNIQHTQNFSPSLEKAEKKIAPFEPFTGK CCCCCCHHHHHHHHHHHHCCHHHHCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCC ITKNKVRLRLHPTYDGYVLREYNQNDLLVINGETEDFYTAQPPKDIKGFVFRTYILDNIV EECCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC EGSRVNVRLQPDLESPVIAQLNSGDKVEGVISSTNNKWLEITIPQTAQFYIAKEYVEKIG CCCEEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHC DAGLMARQEKRKEDVYRLLANTESLSRLEMAKPFDQFNVERIKSNYQAIINNYTDFPDAV CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHH AKAKELLAKLQEAFITKKLAYLEAQNGYSSHILEAKNKQLTEELNAHKTKLASLEQKGGS HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC EKLSNSSISQANPARKTAQLPMNMAIWLPIEEALFNDWVKHSGSENPQAFYEEQKQHSFI CHHCCCCCCCCCCCHHHHCCCCCEEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH LKGIVDAYNRPVKNKPGDYMLINSASKLPIAFLYSTQVNLQDFIGHEVSIRVAPRPNNHY HHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEECCCCHHHHCCCEEEEEEECCCCCCE AFPAYYVLSLE ECCEEEEEEEC >Mature Secondary Structure MMRKPAPSILSFLSLLIPLSSSLLADENQAEVNIQHTQNFSPSLEKAEKKIAPFEPFTGK CCCCCCHHHHHHHHHHHHCCHHHHCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCC ITKNKVRLRLHPTYDGYVLREYNQNDLLVINGETEDFYTAQPPKDIKGFVFRTYILDNIV EECCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC EGSRVNVRLQPDLESPVIAQLNSGDKVEGVISSTNNKWLEITIPQTAQFYIAKEYVEKIG CCCEEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHC DAGLMARQEKRKEDVYRLLANTESLSRLEMAKPFDQFNVERIKSNYQAIINNYTDFPDAV CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHH AKAKELLAKLQEAFITKKLAYLEAQNGYSSHILEAKNKQLTEELNAHKTKLASLEQKGGS HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC EKLSNSSISQANPARKTAQLPMNMAIWLPIEEALFNDWVKHSGSENPQAFYEEQKQHSFI CHHCCCCCCCCCCCHHHHCCCCCEEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH LKGIVDAYNRPVKNKPGDYMLINSASKLPIAFLYSTQVNLQDFIGHEVSIRVAPRPNNHY HHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEECCCCHHHHCCCEEEEEEECCCCCCE AFPAYYVLSLE ECCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA