| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446030
Identifier: 46446030
GI number: 46446030
Start: 529521
End: 530648
Strand: Reverse
Name: 46446030
Synonym: pc0396
Alternate gene names: NA
Gene position: 530648-529521 (Counterclockwise)
Preceding gene: 46446031
Following gene: 161611309
Centisome position: 21.98
GC content: 32.89
Gene sequence:
>1128_bases ATGACAGTTTCCATAAATATATACCCTTTAACATATAAAATTTTATTTCTTGTTATGAAAAAAACTATCTTTATTGCTTC TCTTTCTTTCTTTTTAACTTTTTACGCGCTAGAAGCAATTAAATCGGACGACTTCCTTTCTTCTTCTCGTACTGAAGAAT CTAAAATTTTTATTAATAATCGAATTCTAGCAAGAATTAACGGTAAACCTATTTCTGCCTATGATCTTGTCAAAAAAATG GATGTCACCTTCTATAAACAATTTCCCCAATATCTTTCTTCTACTGAAGCTCGCTACCAATATTATCAATTTAGTTGGAA ATATGCTTTGGAAGATTTAATCAATAAAGAACTTATTTTAGCTGATGCCCAAGAAAGTAAAGTTGAGGTTACTAGTGGAG ATGTTCGACAAGAAATGGAACTCATGTTTGGCCCTAACATTATTGCGAGTTTAGATAAAATTGGTTTATCTTTTGAGGAA GCTTCAAAAATTGTTCAAGGTGATATCCTTTTAAAGCGTATGATCGGTGCCAGGGTCAATGGTAAAGCTATTCGTCAAGT CACACCCTCCAGGGTCCGTAAAAGCTATGAAGATTTTATTAAAGATCCAGCAAATATCCGATTGACTATCTGGAACTATA AAGTTTTGACAATTAAAGATCGTAATCTCAAAAAATCTGAAGAAATCGCCCAGGCTGCTTATCAACTTCTTAGAAAGGGT TTTTCAATTGAAGAAGTTCCTGCTAAATTAAAAGAAGGGAAATTGCTTGGTCGCAAAGGAAAAGTAACTGTTTCAAAGGT AATCCATAACAATGAAAAAGAACTTTCTAAGTCCTATCAACAAATTTTAAATCCTTTAGATACAGGAATGTATAGCCTAC CTTTCGAAAATAAAAGTCGCGTTGAGCATACCACTGTCTATCGAATTTTATTTGTTCAAGAAAAAATTCCTGGTGGTTAC CCTTCCTTTAAAGAAATGGAACCTGTTTTAAAGGAACGACTTTTAAATCAAGTGGCTGATGAAGAGACTGACTTATACCT CAAAAAATTACGAGAACATTTTTACGTCAGAGATAAAGACTTAGAAGCAATGGTTCCTGCTGACTATCAACCTTTTGTTT TAAAATAA
Upstream 100 bases:
>100_bases TCTCGAAGTGGAAGGAGAAATATTCCAAACAATCCCAGCTCAGGGGGAAATGGACGGTTTTTTTGGAGTTGTTCTTAAAA GAGCATAACTCTATCATATA
Downstream 100 bases:
>100_bases GCAAATTTATGCCTATTTATAAACCCAGCGAATTACGCCTTTTTTTAAATCAACTTGGAATTTTCCCCAAAAAAGGACTT TCTCAAAATTTTTTGATTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 375; Mature: 374
Protein sequence:
>375_residues MTVSINIYPLTYKILFLVMKKTIFIASLSFFLTFYALEAIKSDDFLSSSRTEESKIFINNRILARINGKPISAYDLVKKM DVTFYKQFPQYLSSTEARYQYYQFSWKYALEDLINKELILADAQESKVEVTSGDVRQEMELMFGPNIIASLDKIGLSFEE ASKIVQGDILLKRMIGARVNGKAIRQVTPSRVRKSYEDFIKDPANIRLTIWNYKVLTIKDRNLKKSEEIAQAAYQLLRKG FSIEEVPAKLKEGKLLGRKGKVTVSKVIHNNEKELSKSYQQILNPLDTGMYSLPFENKSRVEHTTVYRILFVQEKIPGGY PSFKEMEPVLKERLLNQVADEETDLYLKKLREHFYVRDKDLEAMVPADYQPFVLK
Sequences:
>Translated_375_residues MTVSINIYPLTYKILFLVMKKTIFIASLSFFLTFYALEAIKSDDFLSSSRTEESKIFINNRILARINGKPISAYDLVKKM DVTFYKQFPQYLSSTEARYQYYQFSWKYALEDLINKELILADAQESKVEVTSGDVRQEMELMFGPNIIASLDKIGLSFEE ASKIVQGDILLKRMIGARVNGKAIRQVTPSRVRKSYEDFIKDPANIRLTIWNYKVLTIKDRNLKKSEEIAQAAYQLLRKG FSIEEVPAKLKEGKLLGRKGKVTVSKVIHNNEKELSKSYQQILNPLDTGMYSLPFENKSRVEHTTVYRILFVQEKIPGGY PSFKEMEPVLKERLLNQVADEETDLYLKKLREHFYVRDKDLEAMVPADYQPFVLK >Mature_374_residues TVSINIYPLTYKILFLVMKKTIFIASLSFFLTFYALEAIKSDDFLSSSRTEESKIFINNRILARINGKPISAYDLVKKMD VTFYKQFPQYLSSTEARYQYYQFSWKYALEDLINKELILADAQESKVEVTSGDVRQEMELMFGPNIIASLDKIGLSFEEA SKIVQGDILLKRMIGARVNGKAIRQVTPSRVRKSYEDFIKDPANIRLTIWNYKVLTIKDRNLKKSEEIAQAAYQLLRKGF SIEEVPAKLKEGKLLGRKGKVTVSKVIHNNEKELSKSYQQILNPLDTGMYSLPFENKSRVEHTTVYRILFVQEKIPGGYP SFKEMEPVLKERLLNQVADEETDLYLKKLREHFYVRDKDLEAMVPADYQPFVLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the chlamydial CPn_1058/CT_355/TC_0634 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008880 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43508; Mature: 43377
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVSINIYPLTYKILFLVMKKTIFIASLSFFLTFYALEAIKSDDFLSSSRTEESKIFINN CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC RILARINGKPISAYDLVKKMDVTFYKQFPQYLSSTEARYQYYQFSWKYALEDLINKELIL EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEE ADAQESKVEVTSGDVRQEMELMFGPNIIASLDKIGLSFEEASKIVQGDILLKRMIGARVN ECCCCCEEEECCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC GKAIRQVTPSRVRKSYEDFIKDPANIRLTIWNYKVLTIKDRNLKKSEEIAQAAYQLLRKG CHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCC FSIEEVPAKLKEGKLLGRKGKVTVSKVIHNNEKELSKSYQQILNPLDTGMYSLPFENKSR CCHHHHHHHHHCCCCCCCCCCEEHHHHHHCCHHHHHHHHHHHHHHHHCCCEECCCCCCCC VEHTTVYRILFVQEKIPGGYPSFKEMEPVLKERLLNQVADEETDLYLKKLREHFYVRDKD CHHHHEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC LEAMVPADYQPFVLK CCEECCCCCCCCEEC >Mature Secondary Structure TVSINIYPLTYKILFLVMKKTIFIASLSFFLTFYALEAIKSDDFLSSSRTEESKIFINN EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC RILARINGKPISAYDLVKKMDVTFYKQFPQYLSSTEARYQYYQFSWKYALEDLINKELIL EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEE ADAQESKVEVTSGDVRQEMELMFGPNIIASLDKIGLSFEEASKIVQGDILLKRMIGARVN ECCCCCEEEECCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC GKAIRQVTPSRVRKSYEDFIKDPANIRLTIWNYKVLTIKDRNLKKSEEIAQAAYQLLRKG CHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCC FSIEEVPAKLKEGKLLGRKGKVTVSKVIHNNEKELSKSYQQILNPLDTGMYSLPFENKSR CCHHHHHHHHHCCCCCCCCCCEEHHHHHHCCHHHHHHHHHHHHHHHHCCCEECCCCCCCC VEHTTVYRILFVQEKIPGGYPSFKEMEPVLKERLLNQVADEETDLYLKKLREHFYVRDKD CHHHHEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC LEAMVPADYQPFVLK CCEECCCCCCCCEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9784136 [H]