| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46445982
Identifier: 46445982
GI number: 46445982
Start: 473214
End: 475064
Strand: Direct
Name: 46445982
Synonym: pc0348
Alternate gene names: NA
Gene position: 473214-475064 (Clockwise)
Preceding gene: 46445980
Following gene: 46445984
Centisome position: 19.6
GC content: 30.36
Gene sequence:
>1851_bases TTGGTTGTTAAATTAATTTTTAAAATTTTAATGGTTTTTATGTATAATAATTGTTTTTTTACAAATAATTTTTTTAGTGA ATTAGATTTTACATTTGATATTTTTAATTTCCCAAAAAGTTGCGAAAATAGTTTAAATAATTTTATTAGCAAGGAAGATA AACGAAATTATTCTTCCTTTCGTAAAATTAAAAAAGTAAGAGAAAAAGGTATTTCATCTAAAACACAAATATTTAAAAGA AGGGTTTTTAATGAAAGAAGTATTCCGACAGATTTTCTATCTAAAAGAAAGAAAAAACCTGTAATTATAAGAAAATCTTC TTTGAACCTTACAAGTTTATCAAAAATGGCAAGGATTCCCCATTTGTGCGAAGATACGACAAAGGAACATATCGATAACA AATTTGATGGAAAGAATAGCCAAGTTTTAAATGTTTGTTTTCTAGACAGTCAATTAACTATTAATTATTCACCGATTAGA TTTTCTGAAAGTAAGGAATCAGAATCGAACGAAAGGATGTCCACTGAATTTAAATTTGATGAAGCTTCAATTGATTATTC TTCAGAAGGTAATGAATCAACTATTGCTTATTCACCGATTAGATTTTCTGAAAGTAGGGAATCAGAATCGAATGAAAGGA TGTCCACTGAATTTAAACTTGATGAAGCTTCAATTGATTATTCGTCAGAAGTTAATGAATCAACTGTTGATTATTCACCG ATTAGGTTTTTTGAAAGTGAGGAATTAGAATCGACTGAAAGGATGTTCGTAGAATCTAAATTTGATGAAGCTTCAATTGA TTATTCGTCAGAAGGTAATGAATCAACTATTGATTATTCAATTTCTGCAGCCTTGCAAGAATTTGAACCTGTAAGTTTAG ATAGCGATTTTTTTGAACAGCAAAAACCAAAAGAATGGTTTCCCATTAAAATCGATGGGAATAATAAAATAAGTTTTTCG ATTAATGCAAATGCTAAAAAAATCAAACAATTGATTTACATATTTAGAAATCATACAACTGACGAAATTGCTTTAATAGG GAAAACAGGAACTTCTTTTTCTGCTCGGATGAATCATTACAAAACTAAATTTAATAAAAGTGTTAAACCATCCAATCAAA GTAAAAAGAAATTTATTACTGCAGTTCAAAACAATCCTACTCATTTTGAAGTGGCTATTTTATATGTTTTAAAAGAAGGG GAAAATTTAGATACGTTTGAAACAGGTTTTATTAAAAGTAAAAAACCTCTCTATAATCAGCGAAACGGAGGAGGGGGTGG TTTAACTCATTCGGAAGAAGTATCAGCAATTTATGCAATTCCAAAAAATCCCCTTCTTTTAACTCCAGAAAAAAGGTTTC GTTTTAGAGTAATTGACACTTCTATTAGACCTGAAATTGATCAAGAAATTTATAAAAAGATGCTTTCAATCGCTGATAAA GTTCAAGGAATTTTATATTCCATTAAAGAAATAGGAACTGAAAAACGTTATATTGGCTACACGACAGGGAATAATCCACA CACCCGTATTAGACAACATGGTTATCAAGCTCAAACCTTTTTTCCTTTTAGCGATCAATATGATCCTGAAGAGAAGGATG GAGCATTGCATCCAGCCATGGGACAGAATCCTGAAGGGTTTAGTTTTGGATTTTTACCTATATTACATGATTTGAGTGAA ATGAAACTTGACGAATTAAATGAATATGCAATTGTTTCAACCATTGGTGAAGCAGAAAAAACCGCCATCAAAATTTTAAA AACTTTGGTTAGTCAAGGAGGATTTAATTGCAATGGCGGCGGTGGCGGGCCGATTTCAGGGGGTATTGCCCGAAGATTGA ATTTTGATTAG
Upstream 100 bases:
>100_bases TTTAAACGAATACAATTAGTAAATTCAATTTTTAATTATTATTAAACTATATAGATTTTAATTTTTATACTAATTAAAAC GGCATATTTTATATAATTAA
Downstream 100 bases:
>100_bases ACAAAACTTTAATTTTGAAACTTCTTTTCATTTATTATGATTCAATGAAACTCTCTACTTAAAATGATTTAGAGTTAAAA ATTTTTCGCTTTTATATAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 616; Mature: 616
Protein sequence:
>616_residues MVVKLIFKILMVFMYNNCFFTNNFFSELDFTFDIFNFPKSCENSLNNFISKEDKRNYSSFRKIKKVREKGISSKTQIFKR RVFNERSIPTDFLSKRKKKPVIIRKSSLNLTSLSKMARIPHLCEDTTKEHIDNKFDGKNSQVLNVCFLDSQLTINYSPIR FSESKESESNERMSTEFKFDEASIDYSSEGNESTIAYSPIRFSESRESESNERMSTEFKLDEASIDYSSEVNESTVDYSP IRFFESEELESTERMFVESKFDEASIDYSSEGNESTIDYSISAALQEFEPVSLDSDFFEQQKPKEWFPIKIDGNNKISFS INANAKKIKQLIYIFRNHTTDEIALIGKTGTSFSARMNHYKTKFNKSVKPSNQSKKKFITAVQNNPTHFEVAILYVLKEG ENLDTFETGFIKSKKPLYNQRNGGGGGLTHSEEVSAIYAIPKNPLLLTPEKRFRFRVIDTSIRPEIDQEIYKKMLSIADK VQGILYSIKEIGTEKRYIGYTTGNNPHTRIRQHGYQAQTFFPFSDQYDPEEKDGALHPAMGQNPEGFSFGFLPILHDLSE MKLDELNEYAIVSTIGEAEKTAIKILKTLVSQGGFNCNGGGGGPISGGIARRLNFD
Sequences:
>Translated_616_residues MVVKLIFKILMVFMYNNCFFTNNFFSELDFTFDIFNFPKSCENSLNNFISKEDKRNYSSFRKIKKVREKGISSKTQIFKR RVFNERSIPTDFLSKRKKKPVIIRKSSLNLTSLSKMARIPHLCEDTTKEHIDNKFDGKNSQVLNVCFLDSQLTINYSPIR FSESKESESNERMSTEFKFDEASIDYSSEGNESTIAYSPIRFSESRESESNERMSTEFKLDEASIDYSSEVNESTVDYSP IRFFESEELESTERMFVESKFDEASIDYSSEGNESTIDYSISAALQEFEPVSLDSDFFEQQKPKEWFPIKIDGNNKISFS INANAKKIKQLIYIFRNHTTDEIALIGKTGTSFSARMNHYKTKFNKSVKPSNQSKKKFITAVQNNPTHFEVAILYVLKEG ENLDTFETGFIKSKKPLYNQRNGGGGGLTHSEEVSAIYAIPKNPLLLTPEKRFRFRVIDTSIRPEIDQEIYKKMLSIADK VQGILYSIKEIGTEKRYIGYTTGNNPHTRIRQHGYQAQTFFPFSDQYDPEEKDGALHPAMGQNPEGFSFGFLPILHDLSE MKLDELNEYAIVSTIGEAEKTAIKILKTLVSQGGFNCNGGGGGPISGGIARRLNFD >Mature_616_residues MVVKLIFKILMVFMYNNCFFTNNFFSELDFTFDIFNFPKSCENSLNNFISKEDKRNYSSFRKIKKVREKGISSKTQIFKR RVFNERSIPTDFLSKRKKKPVIIRKSSLNLTSLSKMARIPHLCEDTTKEHIDNKFDGKNSQVLNVCFLDSQLTINYSPIR FSESKESESNERMSTEFKFDEASIDYSSEGNESTIAYSPIRFSESRESESNERMSTEFKLDEASIDYSSEVNESTVDYSP IRFFESEELESTERMFVESKFDEASIDYSSEGNESTIDYSISAALQEFEPVSLDSDFFEQQKPKEWFPIKIDGNNKISFS INANAKKIKQLIYIFRNHTTDEIALIGKTGTSFSARMNHYKTKFNKSVKPSNQSKKKFITAVQNNPTHFEVAILYVLKEG ENLDTFETGFIKSKKPLYNQRNGGGGGLTHSEEVSAIYAIPKNPLLLTPEKRFRFRVIDTSIRPEIDQEIYKKMLSIADK VQGILYSIKEIGTEKRYIGYTTGNNPHTRIRQHGYQAQTFFPFSDQYDPEEKDGALHPAMGQNPEGFSFGFLPILHDLSE MKLDELNEYAIVSTIGEAEKTAIKILKTLVSQGGFNCNGGGGGPISGGIARRLNFD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70503; Mature: 70503
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVVKLIFKILMVFMYNNCFFTNNFFSELDFTFDIFNFPKSCENSLNNFISKEDKRNYSSF CHHHHHHHHHHHHHHCCEEEECCHHHHCCCEEEECCCCHHHHHHHHHHHCCHHHCCHHHH RKIKKVREKGISSKTQIFKRRVFNERSIPTDFLSKRKKKPVIIRKSSLNLTSLSKMARIP HHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEEEECCCCHHHHHHHHHCC HLCEDTTKEHIDNKFDGKNSQVLNVCFLDSQLTINYSPIRFSESKESESNERMSTEFKFD HHHHHHHHHHCCCCCCCCCCCEEEEEEECCEEEEEECCEEECCCCCCCCHHHHCCEEEEC EASIDYSSEGNESTIAYSPIRFSESRESESNERMSTEFKLDEASIDYSSEVNESTVDYSP CCCCCCCCCCCCCEEEECCEECCCCCCCCCHHHHCCEEEECCCCCCCCCCCCCCCCCCCC IRFFESEELESTERMFVESKFDEASIDYSSEGNESTIDYSISAALQEFEPVSLDSDFFEQ CEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCHHHHHH QKPKEWFPIKIDGNNKISFSINANAKKIKQLIYIFRNHTTDEIALIGKTGTSFSARMNHY CCCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH KTKFNKSVKPSNQSKKKFITAVQNNPTHFEVAILYVLKEGENLDTFETGFIKSKKPLYNQ HHHHCCCCCCCCCCHHHEEEEECCCCCEEEEEEEEEEECCCCCCCHHHCCCCCCCCCCCC RNGGGGGLTHSEEVSAIYAIPKNPLLLTPEKRFRFRVIDTSIRPEIDQEIYKKMLSIADK CCCCCCCCCCCCCCEEEEEECCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH VQGILYSIKEIGTEKRYIGYTTGNNPHTRIRQHGYQAQTFFPFSDQYDPEEKDGALHPAM HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCC GQNPEGFSFGFLPILHDLSEMKLDELNEYAIVSTIGEAEKTAIKILKTLVSQGGFNCNGG CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHCHHHHHHHHHHHHHHHCCCCCCCCC GGGPISGGIARRLNFD CCCCCCCCHHHCCCCC >Mature Secondary Structure MVVKLIFKILMVFMYNNCFFTNNFFSELDFTFDIFNFPKSCENSLNNFISKEDKRNYSSF CHHHHHHHHHHHHHHCCEEEECCHHHHCCCEEEECCCCHHHHHHHHHHHCCHHHCCHHHH RKIKKVREKGISSKTQIFKRRVFNERSIPTDFLSKRKKKPVIIRKSSLNLTSLSKMARIP HHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEEEECCCCHHHHHHHHHCC HLCEDTTKEHIDNKFDGKNSQVLNVCFLDSQLTINYSPIRFSESKESESNERMSTEFKFD HHHHHHHHHHCCCCCCCCCCCEEEEEEECCEEEEEECCEEECCCCCCCCHHHHCCEEEEC EASIDYSSEGNESTIAYSPIRFSESRESESNERMSTEFKLDEASIDYSSEVNESTVDYSP CCCCCCCCCCCCCEEEECCEECCCCCCCCCHHHHCCEEEECCCCCCCCCCCCCCCCCCCC IRFFESEELESTERMFVESKFDEASIDYSSEGNESTIDYSISAALQEFEPVSLDSDFFEQ CEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCHHHHHH QKPKEWFPIKIDGNNKISFSINANAKKIKQLIYIFRNHTTDEIALIGKTGTSFSARMNHY CCCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH KTKFNKSVKPSNQSKKKFITAVQNNPTHFEVAILYVLKEGENLDTFETGFIKSKKPLYNQ HHHHCCCCCCCCCCHHHEEEEECCCCCEEEEEEEEEEECCCCCCCHHHCCCCCCCCCCCC RNGGGGGLTHSEEVSAIYAIPKNPLLLTPEKRFRFRVIDTSIRPEIDQEIYKKMLSIADK CCCCCCCCCCCCCCEEEEEECCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH VQGILYSIKEIGTEKRYIGYTTGNNPHTRIRQHGYQAQTFFPFSDQYDPEEKDGALHPAM HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCC GQNPEGFSFGFLPILHDLSEMKLDELNEYAIVSTIGEAEKTAIKILKTLVSQGGFNCNGG CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHCHHHHHHHHHHHHHHHCCCCCCCCC GGGPISGGIARRLNFD CCCCCCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA