| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46445896
Identifier: 46445896
GI number: 46445896
Start: 369607
End: 371316
Strand: Direct
Name: 46445896
Synonym: pc0262
Alternate gene names: NA
Gene position: 369607-371316 (Clockwise)
Preceding gene: 46445895
Following gene: 46445897
Centisome position: 15.31
GC content: 37.78
Gene sequence:
>1710_bases TTGGCATTTGCGATAGCAGGTTATAGTTCATTTTGGCTGATTTTAGCTGTTTGTGTGTTAATTGCTTTTGTAGGAATTAA CTATATTACGATTTGTAAATTTAGCCCCACAGGAGGGGGAGTTTATGCTTCAGCGAGAAGGAAATCGGAAGTATTGGCTC TAATAGGAGCTTTTTTTTTAATTGCTGATTATCTCATTACTGCAGGACTAAGTTCTTTATCCTGTTTTGAATACCTGGGT GTAGAGCATCCCGCTTATTGGGCAATCGGCTCTATTGTATGCATTGGAGCTTTTAATTTTTTTGGGCCGCGCCATACAGG TAATCTTGCCTTAGGAATTGCTGTTTTTACTTTTATAACAGTTCTTATTTTAGCCCTTTTGTCTCTCCCTTTTTTGAAAG ATGCGATTGATTCTATCAAACCTCTTGAAGGGGGGATTCTCAAAAACTGGAATAGCTTTGTGGGAATTATTGTTGCATTA TCGGGTGTAGAGGCCATCGCTAATACAACAGGTGTGATGAAGCTTGATTTAGGCAGTACAGATGCTCATCCTTCAGTCCA TCAGACATCTAAAAAAGCTATTTTATGGGTCATGATCGAAGTTTGTCTTTTTACAGGCCTATTTGGCCTTGCCATGAATG CAATTCCACATTTACAGTTTATTGATGGTCATATTGTGACACCTGATGGAACCAATATTCGTGATGCGATGCTTCGTTAT ATGGGAAATTATTTTGTAACGAATCAATGGGGATCTGAATCGATTGGTTATTTTGTTGGTTATGCTATTAGCTTAGCTTT TGCCATTTTGCTCCTTTCCGCGGTTAATACAGCTATTAATGCACTGATTTCATTAATGTTTGTGATGTCTCGTGATGGAG AAATGCCTGCTGTATTTCAAAAACTTAATGCCTTTGGAGTTCCTATTGTTCCACTCTTAATTGCAACAGGTGCTGCTTCG TTTGTTCTTATTTTTGTACATGATGTTGCTGCTTTAGCGGATCTTTATGCTGTGGGATTTGTAGGAGCCATTGCGACTAA TTTAGGCGTTAATGCTTATGATTCCACAATTCCCATGAGTAAATGGGAGAGAAGTTTCATGTCGTTAACATTTTTTGTGA TGATTATCATTGAAATCACTCTTTTGATAGATAAACCTAACGCTCGCTTTTTTGCGATTTATATCATGGCTGTTGGTTTA GTGTTACGCGCATTGGTGATTGAACATCGGCAAAAACAGTGGGCATCAAAAAAGGTGACCCTAAAGCATGCTTCACTATA CACTGATGATACGCGAGCTTCTTTACATCATGGAGCAATTTTATGCGCTGTTAGAACTATAGGCAAAACGTTAAATTTTT CTCTTCAAGAAGCCAAAAAACAGGGGCAACCTCTTTATATCTTGTTTATTAGGGAACAAAAAATTGTGACAGATGAAGAT AAAAATCGGACTTGGCTTGATGATCATGAGGCTTGCCGAATTTTTGATTATGCAAAAGAAAGCTCTCATGAAATGACAAT TAAATTTTTTTATGTTGTGAGTGCTTCACCTGTTAACTCAATTGTCGATATGGCCGAAAAACTGCAAGTGTCTAGAATTA TTTTAGGTAGGCCGCGACACAGTACGTTGCTACAGATGCTCAGAGGTAATATTGTGCAAGAAGTTTCTGAAGTTCTTACC CCCAATATTGACCTTTTAGTTATCTCTTAA
Upstream 100 bases:
>100_bases GCAAACATCAATTACTAAAAGACCTCGCAACGTTGGCCCCTTTCAAGCAGCAGCTCTCTTATATGGAGACTGGGGAACAA GTAAAGCTTATGTCATTGGA
Downstream 100 bases:
>100_bases AGTTTCGATATTCATTTAAATAAGTATTTTTTGTAAAATCCATTTTTAGATAGTTAATCCTAGAATTTGATTCTTCTCAA GAAACTCTATACAATTAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 569; Mature: 568
Protein sequence:
>569_residues MAFAIAGYSSFWLILAVCVLIAFVGINYITICKFSPTGGGVYASARRKSEVLALIGAFFLIADYLITAGLSSLSCFEYLG VEHPAYWAIGSIVCIGAFNFFGPRHTGNLALGIAVFTFITVLILALLSLPFLKDAIDSIKPLEGGILKNWNSFVGIIVAL SGVEAIANTTGVMKLDLGSTDAHPSVHQTSKKAILWVMIEVCLFTGLFGLAMNAIPHLQFIDGHIVTPDGTNIRDAMLRY MGNYFVTNQWGSESIGYFVGYAISLAFAILLLSAVNTAINALISLMFVMSRDGEMPAVFQKLNAFGVPIVPLLIATGAAS FVLIFVHDVAALADLYAVGFVGAIATNLGVNAYDSTIPMSKWERSFMSLTFFVMIIIEITLLIDKPNARFFAIYIMAVGL VLRALVIEHRQKQWASKKVTLKHASLYTDDTRASLHHGAILCAVRTIGKTLNFSLQEAKKQGQPLYILFIREQKIVTDED KNRTWLDDHEACRIFDYAKESSHEMTIKFFYVVSASPVNSIVDMAEKLQVSRIILGRPRHSTLLQMLRGNIVQEVSEVLT PNIDLLVIS
Sequences:
>Translated_569_residues MAFAIAGYSSFWLILAVCVLIAFVGINYITICKFSPTGGGVYASARRKSEVLALIGAFFLIADYLITAGLSSLSCFEYLG VEHPAYWAIGSIVCIGAFNFFGPRHTGNLALGIAVFTFITVLILALLSLPFLKDAIDSIKPLEGGILKNWNSFVGIIVAL SGVEAIANTTGVMKLDLGSTDAHPSVHQTSKKAILWVMIEVCLFTGLFGLAMNAIPHLQFIDGHIVTPDGTNIRDAMLRY MGNYFVTNQWGSESIGYFVGYAISLAFAILLLSAVNTAINALISLMFVMSRDGEMPAVFQKLNAFGVPIVPLLIATGAAS FVLIFVHDVAALADLYAVGFVGAIATNLGVNAYDSTIPMSKWERSFMSLTFFVMIIIEITLLIDKPNARFFAIYIMAVGL VLRALVIEHRQKQWASKKVTLKHASLYTDDTRASLHHGAILCAVRTIGKTLNFSLQEAKKQGQPLYILFIREQKIVTDED KNRTWLDDHEACRIFDYAKESSHEMTIKFFYVVSASPVNSIVDMAEKLQVSRIILGRPRHSTLLQMLRGNIVQEVSEVLT PNIDLLVIS >Mature_568_residues AFAIAGYSSFWLILAVCVLIAFVGINYITICKFSPTGGGVYASARRKSEVLALIGAFFLIADYLITAGLSSLSCFEYLGV EHPAYWAIGSIVCIGAFNFFGPRHTGNLALGIAVFTFITVLILALLSLPFLKDAIDSIKPLEGGILKNWNSFVGIIVALS GVEAIANTTGVMKLDLGSTDAHPSVHQTSKKAILWVMIEVCLFTGLFGLAMNAIPHLQFIDGHIVTPDGTNIRDAMLRYM GNYFVTNQWGSESIGYFVGYAISLAFAILLLSAVNTAINALISLMFVMSRDGEMPAVFQKLNAFGVPIVPLLIATGAASF VLIFVHDVAALADLYAVGFVGAIATNLGVNAYDSTIPMSKWERSFMSLTFFVMIIIEITLLIDKPNARFFAIYIMAVGLV LRALVIEHRQKQWASKKVTLKHASLYTDDTRASLHHGAILCAVRTIGKTLNFSLQEAKKQGQPLYILFIREQKIVTDEDK NRTWLDDHEACRIFDYAKESSHEMTIKFFYVVSASPVNSIVDMAEKLQVSRIILGRPRHSTLLQMLRGNIVQEVSEVLTP NIDLLVIS
Specific function: Unknown
COG id: COG0531
COG function: function code E; Amino acid transporters
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62407; Mature: 62276
Theoretical pI: Translated: 7.62; Mature: 7.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFAIAGYSSFWLILAVCVLIAFVGINYITICKFSPTGGGVYASARRKSEVLALIGAFFL CEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHH IADYLITAGLSSLSCFEYLGVEHPAYWAIGSIVCIGAFNFFGPRHTGNLALGIAVFTFIT HHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH VLILALLSLPFLKDAIDSIKPLEGGILKNWNSFVGIIVALSGVEAIANTTGVMKLDLGST HHHHHHHHCHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC DAHPSVHQTSKKAILWVMIEVCLFTGLFGLAMNAIPHLQFIDGHIVTPDGTNIRDAMLRY CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHH MGNYFVTNQWGSESIGYFVGYAISLAFAILLLSAVNTAINALISLMFVMSRDGEMPAVFQ HCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH KLNAFGVPIVPLLIATGAASFVLIFVHDVAALADLYAVGFVGAIATNLGVNAYDSTIPMS HHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH KWERSFMSLTFFVMIIIEITLLIDKPNARFFAIYIMAVGLVLRALVIEHRQKQWASKKVT HHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE LKHASLYTDDTRASLHHGAILCAVRTIGKTLNFSLQEAKKQGQPLYILFIREQKIVTDED EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCEEEEEEECCCEECCCC KNRTWLDDHEACRIFDYAKESSHEMTIKFFYVVSASPVNSIVDMAEKLQVSRIILGRPRH CCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCH STLLQMLRGNIVQEVSEVLTPNIDLLVIS HHHHHHHHHHHHHHHHHHHCCCCCEEEEC >Mature Secondary Structure AFAIAGYSSFWLILAVCVLIAFVGINYITICKFSPTGGGVYASARRKSEVLALIGAFFL EEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHH IADYLITAGLSSLSCFEYLGVEHPAYWAIGSIVCIGAFNFFGPRHTGNLALGIAVFTFIT HHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH VLILALLSLPFLKDAIDSIKPLEGGILKNWNSFVGIIVALSGVEAIANTTGVMKLDLGST HHHHHHHHCHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC DAHPSVHQTSKKAILWVMIEVCLFTGLFGLAMNAIPHLQFIDGHIVTPDGTNIRDAMLRY CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHH MGNYFVTNQWGSESIGYFVGYAISLAFAILLLSAVNTAINALISLMFVMSRDGEMPAVFQ HCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH KLNAFGVPIVPLLIATGAASFVLIFVHDVAALADLYAVGFVGAIATNLGVNAYDSTIPMS HHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH KWERSFMSLTFFVMIIIEITLLIDKPNARFFAIYIMAVGLVLRALVIEHRQKQWASKKVT HHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE LKHASLYTDDTRASLHHGAILCAVRTIGKTLNFSLQEAKKQGQPLYILFIREQKIVTDED EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCEEEEEEECCCEECCCC KNRTWLDDHEACRIFDYAKESSHEMTIKFFYVVSASPVNSIVDMAEKLQVSRIILGRPRH CCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCH STLLQMLRGNIVQEVSEVLTPNIDLLVIS HHHHHHHHHHHHHHHHHHHCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA