Click here to switch to the map view.

The map label for this gene is scpB [H]

Identifier: 46445844

GI number: 46445844

Start: 304867

End: 305571

Strand: Reverse

Name: scpB [H]

Synonym: pc0210

Alternate gene names: 46445844

Gene position: 305571-304867 (Counterclockwise)

Preceding gene: 46445845

Following gene: 46445843

Centisome position: 12.66

GC content: 35.32

Gene sequence:

>705_bases
ATGAGTAAAGAGTGGAATTTTTTTCAGGCTGAATTTGCTTTTCCTTCGTCTCGAGATCAAAAACCATCTCCTACTACTTC
AACCTCTATTCATGAAAAACCAAATCTCAACGTTGAAATCTCAAATGAATATCATAAGCAAGAACCTTCTGATGATATCG
AAGAAATAATTCAACTCGATCATCAAATACAACAAACCATTAAAAAAGTCATTGAAGCACTGCTTTTCACAAGTTCCGAC
CCTCTTCCACTATCTAAAATTCGTGAAATTACAGATACTCTTTATCCTTTACGACCTAAGCAATTAAGGCAAATTATTGA
TTCTTTGAGACAAGAATTCATTGCTCATCAACGTGCTTTCAAATTGGAAGAAATTTCTCAAGGTTATGTTTTGCGCACAC
ATGAAGAATATGCCCCCTATTTAGATATTTTACATCGGCAAAAAAGAACGGAAAAAATTTCTTGTGCTGCCACTGAAGTA
TTGGCGATTGTTGCTTATCGACAACCTATTACAAGACCTCAAATTGACGCGATTCGAGGTGTTGATTCTTCGGGCATACT
TAGTCAATTAATTGAACGTCAACTAATTGAAATGGTTGGCAAACTTGAAGCCCCAGGTCGCCCCAGTCTGTATGGAACTA
CTAAAGAATTTCTCAAACATTATGGCTTAAAAGATCTAAGCGAATTAGAAAAAATTAAATCATAA

Upstream 100 bases:

>100_bases
TCTTTTTAGCTATTTTAGAATTGATGAAAATTGGAAGTATAGGTATTGGCAAAAATCCCGAATCTCAGGTTTTGGTATAT
CTTAAGCAAAAGGATGATAA

Downstream 100 bases:

>100_bases
TATTTAAGTAAATTATTTCCATAAATCTTCTTATTATTTTTTTCTAAAAATGGATGAACATTTAGATGAAGTTTAATTAA
AATAATATTATTAAATTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MSKEWNFFQAEFAFPSSRDQKPSPTTSTSIHEKPNLNVEISNEYHKQEPSDDIEEIIQLDHQIQQTIKKVIEALLFTSSD
PLPLSKIREITDTLYPLRPKQLRQIIDSLRQEFIAHQRAFKLEEISQGYVLRTHEEYAPYLDILHRQKRTEKISCAATEV
LAIVAYRQPITRPQIDAIRGVDSSGILSQLIERQLIEMVGKLEAPGRPSLYGTTKEFLKHYGLKDLSELEKIKS

Sequences:

>Translated_234_residues
MSKEWNFFQAEFAFPSSRDQKPSPTTSTSIHEKPNLNVEISNEYHKQEPSDDIEEIIQLDHQIQQTIKKVIEALLFTSSD
PLPLSKIREITDTLYPLRPKQLRQIIDSLRQEFIAHQRAFKLEEISQGYVLRTHEEYAPYLDILHRQKRTEKISCAATEV
LAIVAYRQPITRPQIDAIRGVDSSGILSQLIERQLIEMVGKLEAPGRPSLYGTTKEFLKHYGLKDLSELEKIKS
>Mature_233_residues
SKEWNFFQAEFAFPSSRDQKPSPTTSTSIHEKPNLNVEISNEYHKQEPSDDIEEIIQLDHQIQQTIKKVIEALLFTSSDP
LPLSKIREITDTLYPLRPKQLRQIIDSLRQEFIAHQRAFKLEEISQGYVLRTHEEYAPYLDILHRQKRTEKISCAATEVL
AIVAYRQPITRPQIDAIRGVDSSGILSQLIERQLIEMVGKLEAPGRPSLYGTTKEFLKHYGLKDLSELEKIKS

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 27042; Mature: 26911

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKEWNFFQAEFAFPSSRDQKPSPTTSTSIHEKPNLNVEISNEYHKQEPSDDIEEIIQLD
CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHCCCCCHHHHHHHHHH
HQIQQTIKKVIEALLFTSSDPLPLSKIREITDTLYPLRPKQLRQIIDSLRQEFIAHQRAF
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
KLEEISQGYVLRTHEEYAPYLDILHRQKRTEKISCAATEVLAIVAYRQPITRPQIDAIRG
HHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHC
VDSSGILSQLIERQLIEMVGKLEAPGRPSLYGTTKEFLKHYGLKDLSELEKIKS
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCC
>Mature Secondary Structure 
SKEWNFFQAEFAFPSSRDQKPSPTTSTSIHEKPNLNVEISNEYHKQEPSDDIEEIIQLD
CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHCCCCCHHHHHHHHHH
HQIQQTIKKVIEALLFTSSDPLPLSKIREITDTLYPLRPKQLRQIIDSLRQEFIAHQRAF
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
KLEEISQGYVLRTHEEYAPYLDILHRQKRTEKISCAATEVLAIVAYRQPITRPQIDAIRG
HHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHC
VDSSGILSQLIERQLIEMVGKLEAPGRPSLYGTTKEFLKHYGLKDLSELEKIKS
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA