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The map label for this gene is yscJ [H]

Identifier: 46445839

GI number: 46445839

Start: 299465

End: 300478

Strand: Reverse

Name: yscJ [H]

Synonym: pc0205

Alternate gene names: 46445839

Gene position: 300478-299465 (Counterclockwise)

Preceding gene: 46445840

Following gene: 46445838

Centisome position: 12.44

GC content: 36.0

Gene sequence:

>1014_bases
ATGACTACCAAAAATACTTTTTCACAAACAAATTTGTATTATTTTCTTCGTCAATTTTTCTTATTAATCACTCTCATGGG
GTTGGTCACAAGCTGTGAATCAAGACGCGTCATTGTAAATGGATTAGAAGAAAAAGAAGCTAACGAAATACTCGTTTTTC
TATCCAATAAAGGAATCAATGCCAATAAAGTTCAAGCAGTTTCCGAAGGTGGTGGTGGTGCAAAAGGAGTTTTATGGAAT
ATCAGTGTGGAAGAAGGGCAAGCTAATGAAGCGATGGCTTTATTAAATCAAGTTGGATTACCAAGAAGACGAGGACAAAA
CTTACTTGGTATTTTTGCTAATACCTCTCTAGTTCCTTCAGGCATGCAGGAAAAAATCCGCTATCAAGCTGGGCTTGCCG
AACAAATCGCAAGTACCATCAGAAAAATCGATGGCGTACTAGATGCCGATGTTCAAATTTCTTTTCCTGATGAAGATCCA
CTCAATCCAAATGCACCTAAACAAAAAATCACAGCTTCCGTTTACGTCAAACATAATGGTGTTTTAGATGATCCTAATGC
CCACCTAATTACACGTATAAAGCGTTTAGTTGCTGGCAGTATTAATGGTTTAGATTATGATTATGTCACTGTCATTGGTG
ATAAAGCCCGTTACGGAGATTCTGCCTTAGGAATAATGGGTAATCTTGGAGAAGATGATAGACAATACGTGAATGTTTGG
TCAATTATTTTGGCAAAAGACTCTTTATCACGTTTTAGAATAATTTTCTTCTCCTTCACCATATCTTTGGTTGTTTTGTT
ATTAACACTCATTTGGCTCCTCTGGAAATTTCTTCCAGTCTTGAAAGAAACTGGTGGTTTTAAAGAATTATTATCATTTC
ACCCTATCCTTTTAAATAAGGCGAAAAAGAGTGATACCATCGAAGCAGAGACTTCAGAAAAACAAAAAAATGAGCAATCT
AATAAAAAAGAGACAGAAGATAACACCCTAAATCAAGGAGTTGATGAAACCTAA

Upstream 100 bases:

>100_bases
TTTTCATTGTTTTGCTTAGAAGATCTATAGCTAAATTCATTATTCTGCTAGGATCTGGTTAAAATTATCTCTCAAAAATA
AGCTTAATCCAGAGCGGTTC

Downstream 100 bases:

>100_bases
GCGTTTCATTGATTAAAAGGATTGTTATGGATAAAAGAGGCTGGATGATGATGCGTATTTTCATCAACCGATACCATCTC
AAAGGGGGAGAGATATTATT

Product: putative type III secretion protein SctJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MTTKNTFSQTNLYYFLRQFFLLITLMGLVTSCESRRVIVNGLEEKEANEILVFLSNKGINANKVQAVSEGGGGAKGVLWN
ISVEEGQANEAMALLNQVGLPRRRGQNLLGIFANTSLVPSGMQEKIRYQAGLAEQIASTIRKIDGVLDADVQISFPDEDP
LNPNAPKQKITASVYVKHNGVLDDPNAHLITRIKRLVAGSINGLDYDYVTVIGDKARYGDSALGIMGNLGEDDRQYVNVW
SIILAKDSLSRFRIIFFSFTISLVVLLLTLIWLLWKFLPVLKETGGFKELLSFHPILLNKAKKSDTIEAETSEKQKNEQS
NKKETEDNTLNQGVDET

Sequences:

>Translated_337_residues
MTTKNTFSQTNLYYFLRQFFLLITLMGLVTSCESRRVIVNGLEEKEANEILVFLSNKGINANKVQAVSEGGGGAKGVLWN
ISVEEGQANEAMALLNQVGLPRRRGQNLLGIFANTSLVPSGMQEKIRYQAGLAEQIASTIRKIDGVLDADVQISFPDEDP
LNPNAPKQKITASVYVKHNGVLDDPNAHLITRIKRLVAGSINGLDYDYVTVIGDKARYGDSALGIMGNLGEDDRQYVNVW
SIILAKDSLSRFRIIFFSFTISLVVLLLTLIWLLWKFLPVLKETGGFKELLSFHPILLNKAKKSDTIEAETSEKQKNEQS
NKKETEDNTLNQGVDET
>Mature_336_residues
TTKNTFSQTNLYYFLRQFFLLITLMGLVTSCESRRVIVNGLEEKEANEILVFLSNKGINANKVQAVSEGGGGAKGVLWNI
SVEEGQANEAMALLNQVGLPRRRGQNLLGIFANTSLVPSGMQEKIRYQAGLAEQIASTIRKIDGVLDADVQISFPDEDPL
NPNAPKQKITASVYVKHNGVLDDPNAHLITRIKRLVAGSINGLDYDYVTVIGDKARYGDSALGIMGNLGEDDRQYVNVWS
IILAKDSLSRFRIIFFSFTISLVVLLLTLIWLLWKFLPVLKETGGFKELLSFHPILLNKAKKSDTIEAETSEKQKNEQSN
KKETEDNTLNQGVDET

Specific function: Regulates cultivar-specific nodulation of soybean [H]

COG id: COG4669

COG function: function code U; Type III secretory pathway, lipoprotein EscJ

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yscJ lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003282
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF [H]

EC number: NA

Molecular weight: Translated: 37426; Mature: 37295

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTKNTFSQTNLYYFLRQFFLLITLMGLVTSCESRRVIVNGLEEKEANEILVFLSNKGIN
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEEECCCCC
ANKVQAVSEGGGGAKGVLWNISVEEGQANEAMALLNQVGLPRRRGQNLLGIFANTSLVPS
HHHHEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCHHHCCCEEEEEECCCCCCC
GMQEKIRYQAGLAEQIASTIRKIDGVLDADVQISFPDEDPLNPNAPKQKITASVYVKHNG
CHHHHHHHHHCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHEEEEEEEEECC
VLDDPNAHLITRIKRLVAGSINGLDYDYVTVIGDKARYGDSALGIMGNLGEDDRQYVNVW
CCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCCHHHHHHHH
SIILAKDSLSRFRIIFFSFTISLVVLLLTLIWLLWKFLPVLKETGGFKELLSFHPILLNK
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHC
AKKSDTIEAETSEKQKNEQSNKKETEDNTLNQGVDET
CCCCCCCCCHHHHHHHHHHHCCHHCCCHHHHCCCCCC
>Mature Secondary Structure 
TTKNTFSQTNLYYFLRQFFLLITLMGLVTSCESRRVIVNGLEEKEANEILVFLSNKGIN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEEECCCCC
ANKVQAVSEGGGGAKGVLWNISVEEGQANEAMALLNQVGLPRRRGQNLLGIFANTSLVPS
HHHHEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCHHHCCCEEEEEECCCCCCC
GMQEKIRYQAGLAEQIASTIRKIDGVLDADVQISFPDEDPLNPNAPKQKITASVYVKHNG
CHHHHHHHHHCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHEEEEEEEEECC
VLDDPNAHLITRIKRLVAGSINGLDYDYVTVIGDKARYGDSALGIMGNLGEDDRQYVNVW
CCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCCHHHHHHHH
SIILAKDSLSRFRIIFFSFTISLVVLLLTLIWLLWKFLPVLKETGGFKELLSFHPILLNK
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHC
AKKSDTIEAETSEKQKNEQSNKKETEDNTLNQGVDET
CCCCCCCCCHHHHHHHHHHHCCHHCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412662 [H]