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The map label for this gene is ysgA [H]

Identifier: 46445775

GI number: 46445775

Start: 215902

End: 216651

Strand: Direct

Name: ysgA [H]

Synonym: pc0141

Alternate gene names: 46445775

Gene position: 215902-216651 (Clockwise)

Preceding gene: 46445774

Following gene: 46445776

Centisome position: 8.94

GC content: 36.4

Gene sequence:

>750_bases
ATGACACCTCATTTTATCACTAGTTTACAACATCCTTTTGTCAAACATTTGGTTAAATTAAGGGAAAATAGTCGTTATCG
TTTAGAACATAAAGCATTAATTTTGGAGGGAAGTAAGCCAATTCGAGAAGTTCTTTCTTTCGTTAAAAAGATTATTTACA
CTTCGGCCTATGCTCCGTATTTAACCTTTGAAGGTTTCGAAAAATGGCAAGTCACTGAGGGAATTATGAAAAAAATTTCT
GGGAATAGTACTCCGGAAGGAGTGATTGCAGAGATACAAATGCCTCCTTTTTCTTCTCTTAAGCAAGCTCAAAATATTTT
AGTTTTAGACGGAATTAATGATCCAGGAAATTTGGGAACTTTGATGCGAACAGCACTGGCTTTTGGGTGGAACGGAATTT
ATTTACTCCCTACCAGTTGCGATCCTTACAATGAAAAAGTTTTAAGATCAGCACGGGGAGCCCATTTTAAAATCCCGTTG
AGAAGAGGAAATATCAACGAATTGGAATTGTTAGCGAAACAGGGTAACTTCCAAACGTTGGTTGCAGATTTGAAAGGCCA
AATTCTTAAATCAACGGTCTCTAAAAAACGAAAAATTTTGATCATGGGTAATGAAGCTCATGGACCCTCTCCAGAAGTGT
TTAAATTTGCTGAGCCTATCTGTATTCCCATGTCTGGAGAAATGGAGTCATTAAATGTCGCAGTAGCTGGCGGAATTTTA
TTATATGCTTTAAATCAAATGAATTTTTAG

Upstream 100 bases:

>100_bases
GTATACTTTTAACAGAAGCTGAGAAATTGGCTATTAATAATGATTATCAAGATTCGCAAACGGTATTGAACGCTTTAAAA
CAAACAATGTTATGGAAAAT

Downstream 100 bases:

>100_bases
ATAAAGAATACAGTGTCATCCCTTATCCAAAATTCATGTTAACTTGGAATTGTTGAATGAGTAATGCAGATGATGATCGC
TCTTATTGGAGAGATCCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MTPHFITSLQHPFVKHLVKLRENSRYRLEHKALILEGSKPIREVLSFVKKIIYTSAYAPYLTFEGFEKWQVTEGIMKKIS
GNSTPEGVIAEIQMPPFSSLKQAQNILVLDGINDPGNLGTLMRTALAFGWNGIYLLPTSCDPYNEKVLRSARGAHFKIPL
RRGNINELELLAKQGNFQTLVADLKGQILKSTVSKKRKILIMGNEAHGPSPEVFKFAEPICIPMSGEMESLNVAVAGGIL
LYALNQMNF

Sequences:

>Translated_249_residues
MTPHFITSLQHPFVKHLVKLRENSRYRLEHKALILEGSKPIREVLSFVKKIIYTSAYAPYLTFEGFEKWQVTEGIMKKIS
GNSTPEGVIAEIQMPPFSSLKQAQNILVLDGINDPGNLGTLMRTALAFGWNGIYLLPTSCDPYNEKVLRSARGAHFKIPL
RRGNINELELLAKQGNFQTLVADLKGQILKSTVSKKRKILIMGNEAHGPSPEVFKFAEPICIPMSGEMESLNVAVAGGIL
LYALNQMNF
>Mature_248_residues
TPHFITSLQHPFVKHLVKLRENSRYRLEHKALILEGSKPIREVLSFVKKIIYTSAYAPYLTFEGFEKWQVTEGIMKKISG
NSTPEGVIAEIQMPPFSSLKQAQNILVLDGINDPGNLGTLMRTALAFGWNGIYLLPTSCDPYNEKVLRSARGAHFKIPLR
RGNINELELLAKQGNFQTLVADLKGQILKSTVSKKRKILIMGNEAHGPSPEVFKFAEPICIPMSGEMESLNVAVAGGILL
YALNQMNF

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Drosophila melanogaster, GI24666840, Length=290, Percent_Identity=26.2068965517241, Blast_Score=86, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27798; Mature: 27667

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPHFITSLQHPFVKHLVKLRENSRYRLEHKALILEGSKPIREVLSFVKKIIYTSAYAPY
CCCHHHHHHCCHHHHHHHHHHCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCE
LTFEGFEKWQVTEGIMKKISGNSTPEGVIAEIQMPPFSSLKQAQNILVLDGINDPGNLGT
EEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHCCEEEEECCCCCCHHHH
LMRTALAFGWNGIYLLPTSCDPYNEKVLRSARGAHFKIPLRRGNINELELLAKQGNFQTL
HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHH
VADLKGQILKSTVSKKRKILIMGNEAHGPSPEVFKFAEPICIPMSGEMESLNVAVAGGIL
HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHCCCEEEECCCCCCCEEEEEHHHHH
LYALNQMNF
HHHHHHCCC
>Mature Secondary Structure 
TPHFITSLQHPFVKHLVKLRENSRYRLEHKALILEGSKPIREVLSFVKKIIYTSAYAPY
CCHHHHHHCCHHHHHHHHHHCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCE
LTFEGFEKWQVTEGIMKKISGNSTPEGVIAEIQMPPFSSLKQAQNILVLDGINDPGNLGT
EEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHCCEEEEECCCCCCHHHH
LMRTALAFGWNGIYLLPTSCDPYNEKVLRSARGAHFKIPLRRGNINELELLAKQGNFQTL
HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHH
VADLKGQILKSTVSKKRKILIMGNEAHGPSPEVFKFAEPICIPMSGEMESLNVAVAGGIL
HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHCCCEEEECCCCCCCEEEEEHHHHH
LYALNQMNF
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]